Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 815 a.a., DNA topoisomerase III from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  329 bits (844), Expect = 3e-94
 Identities = 214/652 (32%), Positives = 344/652 (52%), Gaps = 44/652 (6%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           ++ IAEKPS+AR IA  +    KK+ G     NG  VTW  GH     EPD Y   +K+W
Sbjct: 2   KVCIAEKPSVAREIAMVIGAKAKKD-GYYE-GNGYQVTWTFGHFCTLREPDDYRPEWKRW 59

Query: 63  NMADLPIIPEQWQLRPRKSSS--QQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYC 120
           ++ DLP++PE++ ++  K S   +Q  ++++LL +A ++I+ GD  +EG+++   V+   
Sbjct: 60  SLYDLPMLPEKYGIKLMKDSGVQKQFKIIKQLLDKAEEVINCGDAGQEGEVIQRWVLTEA 119

Query: 121 KVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRA 180
           K  K  K    RL IS L   A+++    LR   EF  L  +  +R+  DWL G+N +R 
Sbjct: 120 KYRKPFK----RLWISSLTEEAIRQGFAKLREGAEFDSLYQAGKSRAIGDWLLGLNATRL 175

Query: 181 YTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDI 240
           +TL       Q  LS+GRVQTP L ++V R  EI +F+P  ++ L  L      T +   
Sbjct: 176 FTLKYANGSRQ-TLSIGRVQTPTLAMLVNRHHEIANFVPQPFWELKTLY---RDTTFSST 231

Query: 241 RARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSA 300
             R++  E  L                 +   I     T+T+ E  +  +A P  + L++
Sbjct: 232 NGRFQKEEEAL----------------KIMEAIREAELTITDVETKKGTEAPPKLFDLTS 275

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQI+   + + SA + L   QSLYEK K+++YPR D  +LP +   + P ++  ++N +Q
Sbjct: 276 LQIECNNKLSLSADETLKTVQSLYEK-KVVSYPRVDTTFLPDDIYPKIPGILQGLSNYSQ 334

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
           E+   + +  +    K +N++KV  HHAIIPT   A+   L G E  VY +I R+++  F
Sbjct: 335 EVAPLLQNK-IRKTKKVFNNNKVTDHHAIIPTG--AAAGGLYGREADVYDIITRRFIAAF 391

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVD---KVPPLPVGIV 477
           YP  I +   ++   AG  F  +G+Q+L  GW+V+ G +D + E      K      G++
Sbjct: 392 YPDCIVSNTTVMAESAGYTFKVRGKQILDPGWRVIYGAEDVKSEPTGKDAKEEEEAAGVL 451

Query: 478 LQCREGE-------IKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTE 530
               +GE       ++++ T PP+ +TEATLL+AM    + V D+ELK  L+E +G+G  
Sbjct: 452 PHFEKGEHGPHEPLLEKKMTNPPKEYTEATLLRAMETAGKQVEDEELKDALKE-NGIGRP 510

Query: 531 ATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEA-TYPDMTAHWEHQLQAIAEK 589
           +TRA I++TLFKR  +++D K I  T  G  LI  + +E     +MT  WE +L+ I   
Sbjct: 511 STRAAIIETLFKRQYIRKDKKKIVPTQMGIDLIGVIRNETLKSAEMTGQWERKLRQIEGG 570

Query: 590 GQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSK 641
               + F+Q LQ  +  L+++V+     V+++      KPA K  + A  SK
Sbjct: 571 EFKAEAFLQELQEFVMNLVQEVKYDRATVTIEPQQDEKKPAAKGKKPAAASK 622