Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 874 a.a., type I DNA topoisomerase from Pantoea agglomerans CFBP13505 P0401

 Score =  112 bits (281), Expect = 5e-29
 Identities = 135/556 (24%), Positives = 228/556 (41%), Gaps = 58/556 (10%)

Query: 74  WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRL 133
           +Q+ P K   + +  ++ L   A  I  A D DREG+ +   + +      S+     R+
Sbjct: 92  YQILPGKE--KVVAELKALAANADHIYLATDLDREGEAIAWHLREVIGGDDSR---FSRV 146

Query: 134 LISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGV 193
           + +++  +A+++A +  +     I    +  AR   D + G  +S    LL KK      
Sbjct: 147 VFNEITKNAIRQAFE--KPGELNIDRVNAQQARRFMDRVVGYMVS---PLLWKKIARG-- 199

Query: 194 LSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEY-FDIRARWKPSEACLP 252
           LS GRVQ+  + LVV R+ EI+ F+P +Y+ ++A +    G E   D+  +         
Sbjct: 200 LSAGRVQSVAVRLVVEREREIKAFVPEEYWEVNAALTTPKGDELSMDVTHK--------- 250

Query: 253 WQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFS 312
             D+  R  NR       + +      + + E   T      PY  S LQ  A+ R  F 
Sbjct: 251 -GDKAFRPVNRDETYAAVALLEKARYEIVDREDKPTSSKPGAPYITSTLQQAASTRLGFG 309

Query: 313 AQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLS 372
            ++ + + Q LYE    ITY R+D   L ++ +A A   + +          A+  A   
Sbjct: 310 VKKTMMMAQRLYEAGH-ITYMRTDSTNLSQDAVAMARGYIESNFGKKYLPENAITYAS-- 366

Query: 373 LRSKAWNDSKVDAHHAIIPTPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEA 429
                  ++  +AH AI P+  +     L   E    K+YQLI RQ++      A Y  +
Sbjct: 367 ------KENSQEAHEAIRPSDVEVVAEKLKDMEADAQKLYQLIWRQFVACQMTPAKYDSS 420

Query: 430 KLVFNIAGGIFIAKGRQLLSAGW-KVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQR 488
            +          AKGR L   GW KV+   +   E+    +P + VG VL  ++    Q 
Sbjct: 421 TITAAAGDFRLKAKGRILRFDGWTKVMPALRKNDED--RTLPAVSVGDVLDLQQLLPGQH 478

Query: 489 QTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQR 548
            T+PP  F+EA+L++ +                 E  G+G  +T A I  T+  RG ++ 
Sbjct: 479 FTKPPARFSEASLVREL-----------------EKRGIGRPSTYAAITSTIQDRGYVRV 521

Query: 549 DNKLIKSTPAGRGLIHALPS---EATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLE 605
           +N+   +   G  +   L     E    D TA  E  L  +A     ++  +        
Sbjct: 522 ENRRFYAEKMGEIVTDRLEENFRELMNYDFTARMESNLDQVANNQAQWKAVLDHFFTDFT 581

Query: 606 QLIEQVQVAPVPVSLQ 621
           Q +E  +  P    +Q
Sbjct: 582 QQLELAEKDPEEGGMQ 597