Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score =  116 bits (290), Expect = 5e-30
 Identities = 147/583 (25%), Positives = 257/583 (44%), Gaps = 69/583 (11%)

Query: 74  WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKET-VQR 132
           W+  P+  S +Q+  +   +K A ++  A DPDREG+ +   V    +  K+ K   V+R
Sbjct: 52  WETDPK--SERQIKEIVAAVKGADKLFLATDPDREGEAISWHVRQVLEARKALKGVEVKR 109

Query: 133 LLISDLNLSAVKRALQGLRSNREFIPLSVSA-LARSRADWLYGMNMSRAYTLLGKKAGYQ 191
           ++ +++  SAV   L  +R+ RE     V A LAR   D+L G  +S    +L +K    
Sbjct: 110 VVFNEITKSAV---LDAMRNPREIHQELVDAYLARRALDYLVGFTLS---PVLWRKL--P 161

Query: 192 GVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACL 251
           G  S GRVQ+  L L+  R+ EIE F P +Y+T+ A      G             +   
Sbjct: 162 GSRSAGRVQSVALRLICERESEIESFKPREYWTIAADFLTPKGALLSAGLTHLGGKKL-- 219

Query: 252 PWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNF 311
               ++  +++  L  +  S+ A+    V   E+ +T++    P++ S LQ +A+++  F
Sbjct: 220 ----DKFDLSSEALARDAESKAASARYAVAAVERKRTRRNPYPPFTTSTLQQEASRKLYF 275

Query: 312 SAQQVLDLCQSLY-------EKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVT 364
           +A + + L Q LY       E   LITY R+D   +  E +A A  V+A           
Sbjct: 276 AAARTMQLAQRLYEGVDIGGETVGLITYMRTDGVQMAAEAIAGARAVIAQDFGKVY---- 331

Query: 365 AVNDADLSLRSKAWNDSKVDAHHAIIPTP----KKASVNALSGHEMKVYQLIARQYLMQF 420
            V +A    ++KA N    +AH AI PT      +     L   ++++Y+LI ++ L   
Sbjct: 332 -VPEAPRVYKTKAKNAQ--EAHEAIRPTDLARRPEDVARYLDKDQLRLYELIWKRTLASQ 388

Query: 421 YPAAIYAEAKLVFNIAGG----IFIAKGRQLLSAGW-KVLTGQQD--EQEECVDKVPPLP 473
             AA   +  +  +IAG     +F A G  ++  G+ KV    +D  + E+    +P + 
Sbjct: 389 MAAAELDQVGV--DIAGDQHGIVFRATGSVVVFDGFLKVYREDKDDSDDEDAEKLLPDVT 446

Query: 474 VGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATR 533
               +  +    +Q  T+PP  F+EA+L++ M                 E  G+G  +T 
Sbjct: 447 EKDAMDRKAMRTEQHFTQPPPRFSEASLVKRM-----------------EELGIGRPSTY 489

Query: 534 AGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYP-----DMTAHWEHQLQAIAE 588
           A IL  L +R  ++ D +  +  P  RG +     E+ +      + TA  E+QL  ++ 
Sbjct: 490 ASILSVLQERNYVRLDQR--RFIPEDRGRLVTAFLESFFGRYVEYNFTADLENQLDDVSG 547

Query: 589 KGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAF 631
               ++  +          +++ +   V   L AL  +  P F
Sbjct: 548 GRDDWRKVLDRFWRDFSGAVDETKDLRVAQVLDALDELLGPHF 590