Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., DNA topoisomerase III (EC 5.99.1.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  730 bits (1885), Expect = 0.0
 Identities = 373/619 (60%), Positives = 462/619 (74%), Gaps = 14/619 (2%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RLFIAEKPSL RAIAD LPKPH+K  G I C NG +VTWCIGHLLEQ +PDAYD RY +W
Sbjct: 2   RLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYARW 61

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
           N+ADLPI+PE+WQL+PR S ++QL V+++ L +A +IIHAGDPDREGQLLVDEV+DY ++
Sbjct: 62  NLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAGDPDREGQLLVDEVLDYLQL 121

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
           P  K++ V+R LI+DLN  AV+RA+  LR+N +F+PL VSALAR+RADWLYG+NM+RAYT
Sbjct: 122 PAEKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCVSALARARADWLYGINMTRAYT 181

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           +LG+ AGYQGVLSVGRVQTPVLGLVVRRDEEIE+F+  D+F + A I       +    A
Sbjct: 182 ILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERF---TA 238

Query: 243 RWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQ 302
            W+PSEAC P+QDEEGR+ +R L ++V +RI  QPA VT     +  ++APLP+SLS LQ
Sbjct: 239 IWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPALVTSYNDKRESESAPLPFSLSTLQ 298

Query: 303 IDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEM 362
           I+AAKR+  SAQ VLD+CQ LYE HKLITYPRSDCRYLP+EH A    V+ AI+ +A ++
Sbjct: 299 IEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRQAVMNAISVHAPDL 358

Query: 363 V--TAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
           +    VN      R++ W+D KVDAHHAIIPT + +SV+ L+ +E KVY LIARQYLMQF
Sbjct: 359 LPQPVVNP---DTRNRCWDDKKVDAHHAIIPTARSSSVH-LTENEAKVYTLIARQYLMQF 414

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPV---GIV 477
            P A++ +  +   IA G F+AK R L  AGW+ L G ++  EE  +   PLPV   G  
Sbjct: 415 CPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLLGSKERDEE--NDGTPLPVVAKGDE 472

Query: 478 LQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGIL 537
           L C +GE+ +RQT+PPRHFT+ATLL AMTGIARFV DK+LKKILR TDGLGTEATRAGI+
Sbjct: 473 LLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGII 532

Query: 538 DTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFM 597
           + LFKR  L +  + I ST AG+ LIH+LP  A  PDMTAHWE  L  I+EK   YQ FM
Sbjct: 533 ELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAARPDMTAHWESVLTQISEKQCRYQDFM 592

Query: 598 QTLQGRLEQLIEQVQVAPV 616
           Q L G L QLIEQ +  PV
Sbjct: 593 QPLVGTLYQLIEQAKRTPV 611