Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 865 a.a., DNA topoisomerase I, bacterial from Enterobacter asburiae PDN3

 Score =  105 bits (263), Expect = 7e-27
 Identities = 136/568 (23%), Positives = 235/568 (41%), Gaps = 92/568 (16%)

Query: 73  QWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQR 132
           Q+++ P K   + +  +++L ++A  I  A D DREG+ +   + +   V     +   R
Sbjct: 82  QYEVLPGKE--KVVNELKQLAEKADHIYLATDLDREGEAIAWHLRE---VIGGDDKRYSR 136

Query: 133 LLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQG 192
           ++ +++  +A+++A +  +     I    +  AR   D + G  +S    LL KK     
Sbjct: 137 VVFNEITKNAIRQAFE--KPGELNIDRVNAQQARRFMDRVVGYMVS---PLLWKKIARG- 190

Query: 193 VLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLP 252
            LS GRVQ+  + LVV R+ EI+ F+P +++ +DA +                P    LP
Sbjct: 191 -LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDANVT--------------TPGGDALP 235

Query: 253 WQ-----DEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAK 307
            Q     D+  R  NR       + +      V E E   T      P+  S LQ  A+ 
Sbjct: 236 LQVSHHNDKPFRPENRDQTMAAVALLEKARYKVLEREDKPTSSKPGAPFITSTLQQAAST 295

Query: 308 RYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLP----------------KEHLAQAPDV 351
           R  +  ++ + + Q LYE    ITY R+D   L                 K++L ++ + 
Sbjct: 296 RLGYGVKKTMMMAQRLYEA-GYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESANQ 354

Query: 352 VAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQL 411
            A+   N+QE   A+  +D+S+ +++  D + DA                     K+YQL
Sbjct: 355 YAS-KENSQEAHEAIRPSDVSVLAESLKDMEADA--------------------QKLYQL 393

Query: 412 IARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGW-KVLTGQQDEQEECVDKVP 470
           I RQ++      A Y    L          A+GR L   GW KV+   +   E+    +P
Sbjct: 394 IWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDED--RTLP 451

Query: 471 PLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTE 530
            +  G  L   +    Q  T+PP  F+EA+L+            KEL+K      G+G  
Sbjct: 452 AVNKGDELSLVDLVPAQHFTKPPARFSEASLV------------KELEK-----RGIGRP 494

Query: 531 ATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPS---EATYPDMTAHWEHQLQAIA 587
           +T A I+ T+  RG ++ +N+   +   G  +   L +   E    D TA  E  L  +A
Sbjct: 495 STYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEANFRELMNYDFTAQMEDSLDQVA 554

Query: 588 EKGQAYQPFMQTLQGRLEQLIEQVQVAP 615
                ++  + +        +E+ +  P
Sbjct: 555 SHQAEWKKVLDSFFSDFTDQLEKAEKDP 582