Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score =  115 bits (288), Expect = 8e-30
 Identities = 141/543 (25%), Positives = 230/543 (42%), Gaps = 72/543 (13%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           ++ L + A  +  A D DREG+ +   + +   +     +   R++ +++  +A+++A +
Sbjct: 98  LKALAQNADHVYLATDLDREGEAIAWHLRE---IIGGDDKRFSRVVFNEITKNAIRQAFE 154

Query: 149 G---LRSNREFIPLSVSAL-ARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVL 204
               L  NR      V+A  AR   D + G  +S    LL KK      LS GRVQ+  +
Sbjct: 155 NPGELNINR------VNAQQARRFMDRVVGYMVS---PLLWKKIARG--LSAGRVQSVAV 203

Query: 205 GLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQ-----DEEGR 259
            LVV R+ EI+ F+P +Y+ L A           D+ A     E  L  Q      +  R
Sbjct: 204 RLVVEREREIKAFVPEEYWELHA-----------DLLAN---PEIALQMQVTHHNGKPFR 249

Query: 260 VTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDL 319
             N+       S +      V E E   T      P+  S LQ  A+ R  F  ++ + +
Sbjct: 250 PVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMM 309

Query: 320 CQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWN 379
            Q LYE    ITY R+D   L ++ L  A D +     + +     + +A     SK   
Sbjct: 310 AQRLYEAGH-ITYMRTDSTNLSQDALTMARDYI-----HDEFGKRYLPEAPNLYTSK--- 360

Query: 380 DSKVDAHHAIIPTPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIA 436
           ++  +AH AI P+  K   + L   E    K+YQLI RQ++      A Y    LV +  
Sbjct: 361 ENSQEAHEAIRPSDVKVQADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAG 420

Query: 437 GGIFIAKGRQLLSAGW-KVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRH 495
                AKGR L   GW KV+   +   E+    +P + VG  L   +    Q  T+PP  
Sbjct: 421 DYQLRAKGRTLRFDGWTKVMPALRKGDED--RTLPAIDVGQSLSLEKLSPSQHFTKPPAR 478

Query: 496 FTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKS 555
           ++EA+L+            KEL+K      G+G  +T A I+ T+  RG ++ +N+   +
Sbjct: 479 YSEASLV------------KELEK-----RGIGRPSTYAAIISTIQDRGYVRVENRRFYA 521

Query: 556 TPAGRGLIHALPS---EATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQ 612
              G  +   L     E    D TA  E++L  +A     ++  +        + +E  +
Sbjct: 522 EKMGEIVTDRLEDNFRELMNYDFTARMENRLDLVANSQAEWKGVLDEFFAEFSKQLETAE 581

Query: 613 VAP 615
           + P
Sbjct: 582 LEP 584