Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  728 bits (1880), Expect = 0.0
 Identities = 377/642 (58%), Positives = 471/642 (73%), Gaps = 11/642 (1%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RLFIAEKPSLARAIAD LPKP ++  G I C   D+VTWC+GHLLEQ +PDAYD RY +W
Sbjct: 2   RLFIAEKPSLARAIADVLPKPQRRSDGFIACGEQDVVTWCVGHLLEQAQPDAYDARYARW 61

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
           ++ADLPI+P++W L+PR S S+QL V++KLL +A +IIHAGDPDREGQLLVDEV++Y  +
Sbjct: 62  SLADLPIVPQKWLLQPRPSVSKQLNVIKKLLTQADEIIHAGDPDREGQLLVDEVLEYLAL 121

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
            + K++ V+R LI+DLN  AV+RA+  +R NREF+PL VSALARSRADWLYG+NM+RAYT
Sbjct: 122 SEEKRQHVRRCLINDLNPQAVERAVSRMRENREFVPLCVSALARSRADWLYGINMTRAYT 181

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG+ AGY+GVLSVGRVQTPVLGLVVRRDEEI++F+P DYF + A I    G  +    A
Sbjct: 182 LLGRNAGYEGVLSVGRVQTPVLGLVVRRDEEIDNFVPRDYFEVKAHIVTPAGERFV---A 238

Query: 243 RWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQ 302
            W+PSE+C P+QDEEGR+ +R L ++V  RI  QPA V+     +  + APLPYSLSALQ
Sbjct: 239 LWQPSESCEPYQDEEGRLLHRPLAEHVVKRIDGQPAWVSAYNDKRESETAPLPYSLSALQ 298

Query: 303 IDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEM 362
           I+AAKR+  SAQQVLD+CQ LYE HKLITYPRSDCRYLP+EH A    V+ AIA +  ++
Sbjct: 299 IEAAKRFGLSAQQVLDVCQRLYETHKLITYPRSDCRYLPEEHFAGRQAVLNAIAAHQPDL 358

Query: 363 VTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYP 422
           + A    D   R++ W+DSKVDAHHAIIPT + A   +L+  E +VY LIARQYLMQF  
Sbjct: 359 L-AQPAVDPERRNRCWDDSKVDAHHAIIPTARSAR-TSLTESESQVYGLIARQYLMQFCA 416

Query: 423 AAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPV---GIVLQ 479
            A++ +  +  +IAGG F+AK R L  AGW+ L G ++  EE  ++  PLPV   G  L 
Sbjct: 417 DAVFRKCVIDLDIAGGKFVAKARFLAEAGWRTLLGHKERDEE--NEGTPLPVVAKGDELL 474

Query: 480 CREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDT 539
           C  GE+ +RQT+PPRHFT+ATLL AMTGIARFV DK LKKILRETDGLGTEATRAGI++ 
Sbjct: 475 CERGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRAGIIEL 534

Query: 540 LFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQT 599
           LFKR  L +  + I ST AG+ LIHALP  A +PDMTAHWE  L  I+EK   YQ FMQ 
Sbjct: 535 LFKRAFLIKKGRYIHSTEAGKALIHALPPMAAHPDMTAHWEATLTQISEKHCRYQDFMQP 594

Query: 600 LQGRLEQLIEQVQVAPVPVSLQALPAVSK-PAFKRTRRAPKS 640
           L   L +LI+Q + +    + + LP V + P   R RR  +S
Sbjct: 595 LTQSLHELIQQARQSGNITAFRGLPPVKRSPPAGRKRRQSRS 636