Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  423 bits (1088), Expect = e-122
 Identities = 244/617 (39%), Positives = 348/617 (56%), Gaps = 22/617 (3%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERY-KK 61
           RLF+ EKPS  R IA  L    K+ QG +   +  +VTW +GHLLE   P+ Y E+Y K 
Sbjct: 2   RLFLCEKPSQGRDIAAVLGAS-KRGQGFLSGPD-TVVTWAVGHLLENAMPELYGEQYGKP 59

Query: 62  WNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCK 121
           W +  LP++P++WQ+  +K ++ Q  V+ +LLK++ +++ A D DREG+++  E+++YC+
Sbjct: 60  WRLDVLPLLPQKWQMVVKKDTADQFAVITRLLKQSDEVVIATDADREGEVIARELLEYCR 119

Query: 122 VPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAY 181
                   V RL +S L+ ++V++AL  +R   E   L  + L R RADWL GMN+SR Y
Sbjct: 120 F----NGVVSRLWLSALDEASVRKALANIRPGNETENLYYAGLGRGRADWLIGMNISRLY 175

Query: 182 TLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIR 241
           TL  ++ GY GVLSVGRVQTP L LVV RD  I  F+P  YF ++  +  ++G   F   
Sbjct: 176 TLKARELGYDGVLSVGRVQTPALALVVNRDRLIASFVPKPYFQVN--VKLESGGVVFP-- 231

Query: 242 ARWKPSEACLPWQDEEGRVTNRKLVDNVASR-IANQPATVTESEQDQTKQAAPLPYSLSA 300
           A W  + A   + D E R  N+ + + V    +    A + + E+ + K  APL +SL  
Sbjct: 232 AEWVAAAA---YTDGERRCVNQAVAEQVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGV 288

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQ   A+R+ +S QQVLD  Q+LYE HK  TYPR+DC YLP+  L++ P V++A+  +  
Sbjct: 289 LQQVCAERFGYSPQQVLDTAQALYETHKATTYPRTDCGYLPESMLSEVPHVLSALQQSDP 348

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
            +   +   D S RS+ W+D K+ AHHAIIPTP K ++  ++  E  VY LI   YL QF
Sbjct: 349 SLAPVIASIDPSFRSRIWDDKKITAHHAIIPTPHKCNLAGMNEAERNVYTLIRTHYLAQF 408

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQ-------QDEQEECVDKVPPLP 473
            P       +  FNI G +F   GR  +  GWK L GQ       + + E     +PPL 
Sbjct: 409 MPLLEMDVTRASFNIGGQLFRTSGRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLT 468

Query: 474 VGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATR 533
              V   R  E+K  +T+PP+ ++  TL+ AM   A  V D  LKK+LR+  GLGTEATR
Sbjct: 469 KDAVCGIRGAELKALKTKPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATR 528

Query: 534 AGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAY 593
           AGILD L KRG L +    + ++     L+ ALP+  T   MTA WE  L  IA      
Sbjct: 529 AGILDVLMKRGFLIKKGNHLHASDTACDLVDALPAALTQVGMTALWEQALDDIAAGKMTL 588

Query: 594 QPFMQTLQGRLEQLIEQ 610
             F+      + QL+EQ
Sbjct: 589 DSFVDRQLRWVNQLVEQ 605