Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  305 bits (781), Expect = 5e-87
 Identities = 204/651 (31%), Positives = 338/651 (51%), Gaps = 47/651 (7%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           ++ IAEKPS+AR IA  +   ++K+ G     NG  VTW  GH      P+ YD  +K+W
Sbjct: 2   KVCIAEKPSVAREIAQVIGAKNRKD-GYFE-GNGYQVTWTFGHFCSLYPPEDYDPTWKRW 59

Query: 63  NMADLPIIPEQWQLR--PRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYC 120
           ++  LP++P++++ +  P     +Q  ++R L+ +A  +I+ GD  +EG+L+   V+   
Sbjct: 60  DLYTLPMLPKRFETKIIPDNGVKKQFKIIRDLVNKAQVVINCGDAGQEGELIQRWVLKQA 119

Query: 121 KVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRA 180
                 +  VQRL IS L   +++   + L+   EF  L  +  +R+  DWL GMN +R 
Sbjct: 120 NY----QGAVQRLWISSLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMNATRL 175

Query: 181 YTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDI 240
           YTL  K  GY+ VLS+GRVQTP L ++V R +EIE F P  Y+ L         T Y D 
Sbjct: 176 YTL--KYGGYKQVLSIGRVQTPTLAMLVNRHQEIEQFKPEPYWELQ--------TTYRDT 225

Query: 241 RARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSA 300
                       +   EG+   ++  + +  +I  +   +T  +Q + K+ AP  + L++
Sbjct: 226 T-----------FHSTEGKFLKKEDGEALLGQITGKDLFITAIDQKEGKEYAPKLFDLTS 274

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQ+    ++N +A   L   Q LYE  K++TYPR D  +LP +   +   ++  +     
Sbjct: 275 LQVYCNNKFNLTADNTLKTVQRLYEL-KVVTYPRVDTTFLPNDMYPKISGILKGLGQY-H 332

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGH-EMKVYQLIARQYLMQ 419
                +    +    K +ND KV  HHAIIPT ++  +    GH E KVY +I R++L  
Sbjct: 333 SFTAPLLAKKIRKSPKVFNDKKVTDHHAIIPTGEEKQL----GHTEQKVYDIIVRRFLAA 388

Query: 420 FYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQE-ECVDKVPPLPVGIVL 478
           FYP    A+ ++   I    F+AKG+++L  GW+ L  + +++E +  D       GI+ 
Sbjct: 389 FYPDCKVAKTQVTGEIEQTTFLAKGKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILP 448

Query: 479 QCREGE-------IKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEA 531
              +GE       +K++ T+PP+++TEA+LL+AM    + V D EL+ +++  +G+G  +
Sbjct: 449 TFEKGEHGPHHPTLKEKITKPPKNYTEASLLRAMETAGKQVEDDELRDLMK-ANGIGRPS 507

Query: 532 TRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSE-ATYPDMTAHWEHQLQAIAEKG 590
           TRA I++TLF+R  ++R  KL+  T  G  LI  + +E     ++T  WE QL+ I E  
Sbjct: 508 TRASIIETLFRRKYIERRKKLVVPTEMGIQLIGTIQNELLKSAELTGQWEKQLKEIEEGA 567

Query: 591 QAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSK 641
            +   F+  ++  + +L+ +V+       L A P  S    K T  A K K
Sbjct: 568 FSAIQFIANMKKMVAELVSEVKQEHNKPRL-ASPFASDNQKKSTPSASKKK 617