Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  259 bits (662), Expect = 3e-73
 Identities = 196/600 (32%), Positives = 299/600 (49%), Gaps = 55/600 (9%)

Query: 6   IAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWNMA 65
           IAEKPS+AR IA  L    KKE       NG  VTW  GHL+    P+ Y      ++ A
Sbjct: 5   IAEKPSVAREIASLLGATEKKEGHLT--GNGYFVTWAFGHLVGLGMPEDYG--ITGFDKA 60

Query: 66  DLPIIPEQWQLRPRK-----------SSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVD 114
            LPI+P  + L  RK            + +QL ++ +L   +  II A D  REG+L+  
Sbjct: 61  ALPILPHPFLLAVRKVKKDKGYTTDAGAIKQLKIIEQLFNRSDGIIVATDAGREGELIFR 120

Query: 115 EVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYG 174
            + +Y K  K      QRL IS L   A+K+    L+  +EF  L  +A  RSRADWL G
Sbjct: 121 YIYEYLKCIKP----FQRLWISSLTEKAIKQGFDNLKDGKEFDGLYQAAQGRSRADWLVG 176

Query: 175 MNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNG 234
           +N ++A ++    A   GV S+GRVQTP L L+ RR  E ++F    Y+     I   + 
Sbjct: 177 INATQALSI----AAGNGVYSLGRVQTPTLALICRRYLENKNFSVQKYWQ----IQLSHT 228

Query: 235 TEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIA--NQPATVTESEQDQTKQAA 292
            E+ + ++  K             +  N+KL  +    I      A VT  E     +  
Sbjct: 229 KEFIEFKSLSK------------NKWDNQKLAKDTLKSIERNGNTAAVTSVETKNVTEQP 276

Query: 293 PLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVV 352
           PL + L+ LQ +  K+ N SA++ L + QSLYEK K ITYPR+  +Y+P++   + P+++
Sbjct: 277 PLLFDLTGLQKEVNKKLNLSAEETLKIAQSLYEK-KFITYPRTGSKYIPEDMWTEIPNLI 335

Query: 353 AAI--ANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQ 410
            A+   +  ++ V  V     + R    ND +V  HH ++ T    S  AL+  E  VY 
Sbjct: 336 RALQDRDTCKQAVAKVKWGRFNKR--IVNDLRVTDHHGLLTTDTIPS--ALNAKENAVYD 391

Query: 411 LIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQ-QDEQEECVDKV 469
           +IA + L     A       +        F  KG ++L  GW+ + G   D+  E ++ +
Sbjct: 392 MIAFRLLEAISGACTKEATHITLQALHYDFTTKGCKVLEPGWRSIKGNFTDDDAEPIEDL 451

Query: 470 PPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGT 529
           P +  G VL+ ++  + +++T+PP  +TEA LL AM    + + ++E +K L+   G+GT
Sbjct: 452 PDIKEGDVLKIKQAAVLEKKTKPPVLYTEAGLLSAMETAGKDIKNEEERKALQNI-GIGT 510

Query: 530 EATRAGILDTLFKRGLLQRDNKLIKSTPAGRGL-IHALPSEATYPD--MTAHWEHQLQAI 586
            ATRA I++TLF R  +QR+ K +   P  +GL ++ L  +    D  MTA WE  LQ I
Sbjct: 511 PATRAAIIETLFTRNYIQREKKSL--IPTEKGLQVYELVKDRKIADVAMTAEWELALQKI 568