Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., DNA topoisomerase I, bacterial from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  106 bits (264), Expect = 4e-27
 Identities = 130/557 (23%), Positives = 239/557 (42%), Gaps = 86/557 (15%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L I E P+ A+ I   L K +K             VT   GH+ +  + D   +    + 
Sbjct: 5   LVIVESPAKAKTIEGYLGKDYK-------------VTSSYGHVRDLPKGDKAIDIKNHFK 51

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
                  P       +K   +QL   +K++K++  I  A D DREG+ +   + +  K+ 
Sbjct: 52  -------PTYEVTSDKKEVIKQL---KKMVKDSDTIYLASDDDREGEAISWHLKEVLKLD 101

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
             K    +R++  ++  +A+ +A++  RS    I L  +  AR   D L G  +S    +
Sbjct: 102 NDK---TKRIVFREITKNAITKAIENPRSID--IDLVNAQQARRILDRLVGFELS---PV 153

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRAR 243
           L KK   +  LS GRVQ+  +  +V R+ EI+ F     + + A+   +      ++  +
Sbjct: 154 LWKKV--KAGLSAGRVQSVAVRFIVEREREIDKFESKSSYKVTAIFNVKGKELNAELPKK 211

Query: 244 WKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQI 303
           ++  E      + E  + N    D     +  +PA          K+    P++ S LQ 
Sbjct: 212 FETQE------EAEAFLKNCLEADFSIKNLEKKPA----------KKTPAAPFTTSTLQQ 255

Query: 304 DAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPD-VVAAIANNAQEM 362
           +A+++ +FS  Q + L Q LYE  K ITY R+D   L +E +  A + +++A      + 
Sbjct: 256 EASRKLSFSVAQTMTLAQRLYEAGK-ITYMRTDSVNLSQEAMESAQNQIISAFGPEYHK- 313

Query: 363 VTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYP 422
                    S +  + ++   +AH AI PT       +   +E ++Y+LI ++ +     
Sbjct: 314 ---------SRKYTSKSEGAQEAHEAIRPTNFANEEISGERNEQRLYELIWKRAIASQMA 364

Query: 423 AAIYAEAKLVFNIAGG--IFIAKGRQLLSAGW-KVLTGQQDEQEECVDK-----VPPLPV 474
            A+  +  +   I+       A G  +   G+ KV     D++EE  +      +PPL +
Sbjct: 365 DALLEKTLVTIGISNSDLTLSASGEVIKFEGFLKVYLESTDDEEEEENNDNKGLLPPLTI 424

Query: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534
           G  L   E + +Q  T PP  +TEA+L++ +                 E  G+G  +T A
Sbjct: 425 GQDLDLIEMKSRQSFTRPPARYTEASLVKKL-----------------EEMGIGRPSTYA 467

Query: 535 GILDTLFKRGLLQRDNK 551
             + T+ KR  + ++++
Sbjct: 468 PTISTIQKRNYVIKESR 484