Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 717 a.a., DNA topoisomerase 3 from Bacteroides stercoris CC31F

 Score =  313 bits (803), Expect = 1e-89
 Identities = 215/673 (31%), Positives = 356/673 (52%), Gaps = 49/673 (7%)

Query: 6   IAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWNMA 65
           IAEKPS+AR IAD L    KK+ G I   NG  VTW  GHL    EP  Y   +K W++ 
Sbjct: 5   IAEKPSVARDIADVLGAKDKKD-GYIE-GNGYQVTWTFGHLCTLKEPHEYTPNWKSWSLG 62

Query: 66  DLPIIPEQWQLR--PRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
            LP++P ++ ++     +  +Q  V+  L++ A  II+ GD  +EG+L+   V+      
Sbjct: 63  SLPMVPPRFGIKLISNPTYERQFHVIENLMQHADMIINCGDAGQEGELIQRWVMQKA--- 119

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
              +  V+RL IS L   A++     LR   +F PL  + L+R+  DWL GMN +R YT+
Sbjct: 120 -GARCPVKRLWISSLTEEAIREGFAKLRDASDFQPLYEAGLSRAIGDWLLGMNATRLYTM 178

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDAL--------IPYQNGT 235
             K    + VLS+GRVQTP L L+V R  EI++F+P  Y+ L  +        I  ++  
Sbjct: 179 --KYGQNRQVLSIGRVQTPTLALIVNRQLEIQNFVPKQYWELKTVYRDTTFSAILRKSDE 236

Query: 236 EYFDIRARWKPSEACLPWQDEEGR----VTNRKLVDNVASRIANQPATVTESEQDQTKQA 291
           E      + K        + E+ R    +T+R+  + +  +I N   T+T   +   K+A
Sbjct: 237 ELVLEAEKQKEGATAKAAKPEDNRGIEPITDRERGEALLEQIKNSLFTITNVTRKNGKEA 296

Query: 292 APLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDV 351
            P  + L++LQ++  +++ FSA + L   QSLYEK K+ TYPR D  +L  +   + P +
Sbjct: 297 PPRLFDLTSLQVECNRKFAFSADETLKTIQSLYEK-KVTTYPRVDTTFLSDDIYPKCPGI 355

Query: 352 VAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQL 411
           +  +  + Q +   ++ A L    K +++SKV  HHAIIPT +      L+  E +V+ L
Sbjct: 356 LKGL-RDYQVLTAPLDGATLPKSKKVFDNSKVTDHHAIIPTGQPP--QNLTDMERRVFDL 412

Query: 412 IARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTG------QQDEQEEC 465
           IAR+++  FYP  ++A   ++  +    F   G+Q+L  GW+V+ G      Q++++E+ 
Sbjct: 413 IARRFIAVFYPDCLFATTTVIGEVEQIEFKVSGKQILEPGWRVVFGTPSAQSQEEKEEKG 472

Query: 466 VDKVPPLPVGIVLQC--REGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRE 523
            ++   LP  +V +      ++ ++ T+PPR +TEATLL+AM    + V + EL+  L+E
Sbjct: 473 GEEENVLPAFVVGESGPHLPDLYEKWTQPPRPYTEATLLRAMETAGKLVDNDELRDALKE 532

Query: 524 TDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSE-ATYPDMTAHWEHQ 582
            +G+G  +TRA I++TLFKR  ++++ K + +TP G  LI  +  E     ++T  WE +
Sbjct: 533 -NGIGRPSTRAAIIETLFKRNYIRKEKKNLIATPTGVELIQIIHEELLKSAELTGIWEKK 591

Query: 583 LQAIAEKGQAYQPFMQTLQGRLEQLIEQVQ----------VAPVP---VSLQALPAVSKP 629
           L+ I ++      F++ L+  + +++  V            APVP      +A  A  KP
Sbjct: 592 LREIEKRTYNAGQFLEELKQMVSEIVMSVLSDNSNRHITIQAPVPEKGKGEKAAAASDKP 651

Query: 630 AFKRTRRAPKSKA 642
             +  +RAP+  A
Sbjct: 652 KKEPKKRAPRKSA 664