Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 724 a.a., DNA topoisomerase from Bacteroides ovatus ATCC 8483

 Score =  300 bits (769), Expect = 1e-85
 Identities = 209/657 (31%), Positives = 345/657 (52%), Gaps = 37/657 (5%)

Query: 6   IAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWNMA 65
           IAEKPS+AR IA+ L   H +++G I   NG  VTW  GHL    EP  Y   +K WN+ 
Sbjct: 5   IAEKPSVARDIAEVLGA-HTRKEGYIE-GNGYQVTWTFGHLCTLKEPHEYTPNWKSWNLG 62

Query: 66  DLPIIPEQWQLR--PRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
            LP+IP ++ ++     +  +Q  ++  L++ A +II+ GD  +EG+L+   V+      
Sbjct: 63  SLPMIPPRFGIKLIENPTYEKQFHIIEGLMQNADEIINCGDAGQEGELIQRWVMQKA--- 119

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
              +  V+RL IS L   A++     L+   +F  L  + L+R+  DWL GMN +R YT+
Sbjct: 120 -GARCPVKRLWISSLTEEAIREGFAKLKDQTDFQSLYEAGLSRAMGDWLLGMNATRLYTI 178

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRAR 243
             K    + VLS+GRVQTP L L+V R  EI +F P  Y+ L     Y++ T  F    R
Sbjct: 179 --KYGQNKQVLSIGRVQTPTLALIVNRQLEIANFEPKQYWELKT--NYRDTT--FSALIR 232

Query: 244 WKPSEACLPWQDEEGR----------VTNRKLVDNVASRIANQPATVTESEQDQTKQAAP 293
               E     +   G+          + NR+  + +  RI + P  VT   +   ++ AP
Sbjct: 233 KSDEEIAAEEEKNGGKKKIDNPGIDPIANREEGEALVERIKDLPFVVTSVGKKDGREFAP 292

Query: 294 LPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVA 353
             + L++LQ++  K++ +SA + L L QSLYEK K+ TYPR D  +L  +   + P ++ 
Sbjct: 293 RLFDLTSLQVECNKKFAYSADETLKLIQSLYEK-KVATYPRVDTTFLSDDIYPKCPAILK 351

Query: 354 AIANNAQEMVTA-VNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLI 412
            + +   E++TA +    L    K +++SKV  HHAIIPT   A    L+  E +VY LI
Sbjct: 352 GLRD--YEVLTAPLAGTTLPKSKKVFDNSKVTDHHAIIPTGVYA--QNLTDMERRVYDLI 407

Query: 413 ARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQ-----DEQEECVD 467
           AR+++  FYP    +   ++  +    F   G+Q+L  GW+V+  +      +E+EE  +
Sbjct: 408 ARRFIAVFYPDCKISTTTVMGEVDKIEFRVTGKQILEPGWRVVFAKDVKDPTEEKEEEDE 467

Query: 468 KVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGL 527
            V P  V         ++ ++ T+PPR +TEATLL+AM    + V + EL+  L+E +G+
Sbjct: 468 NVLPTFVKGESGPHIPDLNEKWTQPPRPYTEATLLRAMETAGKLVDNDELRDALKE-NGI 526

Query: 528 GTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSE-ATYPDMTAHWEHQLQAI 586
           G  +TRA I++TLFKR  ++++ K + +TP G  L+  +  E     ++T  WE +L+ I
Sbjct: 527 GRPSTRAAIIETLFKRNYIRKERKNLIATPTGVELVQLIHEELLKSAELTGIWEKKLREI 586

Query: 587 AEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSKAR 643
            +K    + F++ L+  + +++  V        +    AV+  A ++ ++  K + R
Sbjct: 587 EKKTYDARQFLEELKQMVSEIVMSVLSDNTNRRITIQDAVAAKAEEKEKKETKKRER 643