Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., type IA DNA topoisomerase from Phocaeicola dorei CL03T12C01

 Score =  262 bits (669), Expect = 4e-74
 Identities = 204/604 (33%), Positives = 309/604 (51%), Gaps = 56/604 (9%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           ++ IAEKPS+AR IA  +   ++K+ G I   NG  VTW  GHL+    P  Y      +
Sbjct: 2   QVIIAEKPSVAREIAAIVGATNRKD-GFIE-GNGYAVTWAFGHLVGLAMPQQYG--IAGF 57

Query: 63  NMADLPIIPEQWQLRPRKSSS-----------QQLTVVRKLLKEATQIIHAGDPDREGQL 111
              +LPI+P  + L PR+              +QL ++R+L   A +II A D  REG+L
Sbjct: 58  RRENLPILPSSFILLPRQVREGKEYKADPGVVKQLGILRELFGMAERIIVATDAGREGEL 117

Query: 112 LVDEVIDY--CKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRA 169
           +   +  Y  C+ P        RL IS L   A++  LQ LR   E+  L +SA ARS A
Sbjct: 118 IFRYIYSYLECRTP------FVRLWISSLTDRAIREGLQHLRPGNEYDNLYLSAKARSEA 171

Query: 170 DWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALI 229
           DW+ G+N S+A  +    A  +GV S+GRVQTP L ++  R  E + F P  YF L  L 
Sbjct: 172 DWIVGINASQALAV----AAGRGVWSLGRVQTPTLAIICSRYLENKAFKPATYFRLK-LS 226

Query: 230 PYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTK 289
             + GTE+             L  +  +GR    K     A  I  +   V   E+ +T+
Sbjct: 227 TAKEGTEF-----------TVLSTEKFDGR---EKAEAARAEVIGARTVRVVNVERKETR 272

Query: 290 QAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAP 349
           +  PL Y L+ LQ +A  RY FSA++ LD+ QSLYEK K ITYPR+  RY+ ++   + P
Sbjct: 273 EQPPLLYDLTTLQKEANSRYGFSAEKTLDIAQSLYEK-KFITYPRTGSRYISEDVAEEIP 331

Query: 350 DVVAAIANNAQ--EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMK 407
            ++  +    +  E  + ++ A LS RS   ++ K+  HHA++PT    S   L      
Sbjct: 332 ALIGNMTRYPRFAEYASRMDTASLSRRSV--DNEKIADHHALLPTENLPS--ELDADHRI 387

Query: 408 VYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-VLTGQQDEQEECV 466
           VY+++A + L  F  A +     L    AG  F A+G  ++  GW+ VL    +E+EE +
Sbjct: 388 VYEMVAGRMLETFSGACVKENTSLTLQSAGHDFTARGSIMVETGWRAVLNEPVEEKEEDM 447

Query: 467 DKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDG 526
             +P +  G  L  +    +Q+QT P    TE++LL AM    R ++D+  ++ +++  G
Sbjct: 448 TLLPDIVQGDELPVKGCGTEQKQTRPRPLHTESSLLAAMETAGRELSDEAEREAMKDA-G 506

Query: 527 LGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGL-IHALPSEATYPD--MTAHWEHQL 583
           +GT ATRA I++TLF R  ++R+ K +   P  +GL ++A+  +    D  MT  WE  L
Sbjct: 507 IGTPATRAAIIETLFAREYVRREKKSL--VPTDKGLAVYAVVRDKKIADVAMTGGWELAL 564

Query: 584 QAIA 587
             IA
Sbjct: 565 SKIA 568