Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score = 99.8 bits (247), Expect = 5e-25
 Identities = 151/609 (24%), Positives = 251/609 (41%), Gaps = 88/609 (14%)

Query: 63  NMADLP-----IIPEQ-----WQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLL 112
           ++ DLP     ++P+Q     W++    +S++++  +   +K +  +  A DPDREG+ +
Sbjct: 31  HVRDLPAKDGSVLPDQDFEMSWEVD--SASAKRMKDIADAVKSSDGLFLATDPDREGEAI 88

Query: 113 VDEVIDYCKVPKSKKET-VQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADW 171
              V+D  K  +   +  V+R++ + +   AV  A+   R     +PL  + LAR   D+
Sbjct: 89  SWHVLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDID--VPLVDAYLARRALDY 146

Query: 172 LYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPY 231
           L G N+S    +L +K    G  S GRVQ+  L LV  R+ EIE F+  +Y+ + AL+  
Sbjct: 147 LVGFNLS---PVLWRKL--PGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKT 201

Query: 232 QNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKL-----VDNVASRIANQPATVTESEQD 286
             G E+          EA L   D + R+ +R +      + + + +      V   E  
Sbjct: 202 PRGDEF----------EAKLVSADGK-RLQSRGIKTGEDANRLKALLEGATYVVDTVEAK 250

Query: 287 QTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLY-------EKHKLITYPRSDCRY 339
             K+    P++ S LQ  A+ R  F A + + + Q LY       E   LITY R+D   
Sbjct: 251 PVKRNPGPPFTTSTLQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQ 310

Query: 340 LPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVN 399
           +  E +  A     AI     E          S ++K    +  +AH AI PT    + +
Sbjct: 311 IAPEAIDAAR---LAIGEQFGERYVPEKARFYSTKAK----NAQEAHEAIRPTDFTRTPD 363

Query: 400 A----LSGHEMKVYQLI-ARQYLMQFYPAAIYAEAKLVFNIAGGI---FIAKGRQLLSAG 451
                L   ++++Y LI  R    Q   A I      +     G      A G  +   G
Sbjct: 364 QVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDG 423

Query: 452 W-KVLTGQQDEQEECVD-----KVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAM 505
           +    T Q+++ E+  D     ++P +     L  ++    Q  TEPP  ++EA+L++ M
Sbjct: 424 FIAAYTDQKEDGEQSDDGDDEGRLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKM 483

Query: 506 TGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHA 565
                            E  G+G  +T A  L TL  R  +  D +  K  P  RG +  
Sbjct: 484 -----------------EELGIGRPSTYAATLKTLSDREYIVIDKR--KLIPHSRGRLVT 524

Query: 566 LPSEATYP-----DMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVAPVPVSL 620
              E+ +      D TA  E +L  I+     ++  ++         IE  +   V   L
Sbjct: 525 AFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVL 584

Query: 621 QALPAVSKP 629
            AL  V  P
Sbjct: 585 DALNEVLAP 593