Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 880 a.a., DNA topoisomerase 1 from Acinetobacter radioresistens SK82

 Score =  119 bits (298), Expect = 6e-31
 Identities = 136/538 (25%), Positives = 234/538 (43%), Gaps = 70/538 (13%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           ++KL  +  +I  A D DREG+ +   + +      S+    QR++ +++  +A++ A +
Sbjct: 118 LKKLASQVDEIYLATDLDREGEAIAWHLKEVIGGDDSR---YQRVVFNEITKNAIQEAFK 174

Query: 149 G---LRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLG 205
               L +N+       +  AR   D + G  +S    LL +K      LS GRVQ+  + 
Sbjct: 175 QPGRLDTNKVH-----AQQARRFLDRVVGFMIS---PLLWEKIARG--LSAGRVQSVAVK 224

Query: 206 LVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGR---VTN 262
           LVV R+ EI  FIP +Y+ + A                 K  +  L    + G+   + N
Sbjct: 225 LVVEREREIRAFIPEEYWQVFA-------------DTLSKKDQIRLEAVKQAGKTLKLKN 271

Query: 263 RKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQS 322
           +   D +   +     TV + E   TK     PY  S LQ  A+ R  FS ++ + L Q 
Sbjct: 272 KAQTDTLLEVLKKSEFTVAQREDKPTKVNPSAPYITSTLQQAASTRLGFSVKKTMMLAQR 331

Query: 323 LYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWND-- 380
           LYE    ITY R+D  +L       + D +  + N+ +   +   D  L  +   +    
Sbjct: 332 LYE-GGFITYMRTDSTFL-------SDDAIKMVRNHIE---SEYGDKYLPAKPNRYGSKA 380

Query: 381 SKVDAHHAIIPTPKKASVNALSGHE---MKVYQLIARQYLMQFYPAAIYAEAKLVFNIAG 437
              +AH AI P+  +   + L+G E    ++Y LI RQ++      A Y  + L    + 
Sbjct: 381 GAQEAHEAIRPSSVELKGDQLAGVERDAQRLYDLIWRQFVACQMTPAEYLSSTLTVAASD 440

Query: 438 GIFIAKGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFT 497
               AKGR L+  G+  + G     ++ +  +P + VG VL+  + +  Q  T+PP  FT
Sbjct: 441 VELKAKGRILVFDGFTKIRGANKSDDDVL--LPAVKVGEVLKLEKLDPSQHFTKPPARFT 498

Query: 498 EATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTP 557
           EA+L+            KEL+K      G+G  +T A I+ T+  RG ++ +N+ + +  
Sbjct: 499 EASLV------------KELEK-----RGIGRPSTYAAIISTIQDRGYVKLENRRLYAEK 541

Query: 558 AGRGLIHALP---SEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQ 612
            G  +   L    +       TA  E QL  +A   + ++  + +  G  +Q +   Q
Sbjct: 542 MGEIVTDRLDESFNNLMNYAFTADLEGQLDKVATGERNWKELLDSFYGDFKQRLNNAQ 599