Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  250 bits (639), Expect = 3e-71
 Identities = 124/293 (42%), Positives = 177/293 (60%), Gaps = 6/293 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PLIYH  YS  + P  HR+P++K+RLL + +V      ++     +   P    L+   
Sbjct: 3   LPLIYHDDYSP-EFPADHRFPMDKFRLLRDHLVDSGLTEDSQLLRPQLCPPEILALA--- 58

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
             HD  Y++  + G LS    RR+G PW++ L  RT+ +VGG+ L  EQAL  G+A HL+
Sbjct: 59  --HDAGYIERYMGGELSREDQRRLGLPWNEALARRTVRAVGGSILAAEQALDHGLACHLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHAH D+ +GFC+FNDLA+ +H+ L+   V++VLI D DVH GDGTA +  +  + I
Sbjct: 117 GGTHHAHYDYPAGFCIFNDLAVISHYLLASGRVNRVLIFDCDVHQGDGTARILHDTPDAI 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T+S HC+KNFPARK  S  D+      GD ++L      +   + L++PDL+LYDAGVD+
Sbjct: 177 TVSLHCEKNFPARKAQSDWDIPLPMGMGDADYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
           H DD LGYL ++   +A RD  ++       IP+  VIGGGY +D  AL   H
Sbjct: 237 HKDDALGYLKLTDEGVAARDESVMRHCLGRDIPVMGVIGGGYSKDRPALARRH 289