Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Variovorax sp. SCN45

 Score = 70.1 bits (170), Expect = 6e-17
 Identities = 53/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%)

Query: 49  FHTPIAAELSRITRLHDPDYVQALLEGTLSAAKMRRIGFPWSKP---LIERTLYSVGGTC 105
           +  P+A + +++ R H   +V+ L+   ++ A+  R   P ++     ++  L + G   
Sbjct: 46  YDAPLATQ-AQLARAHTMSHVRELI--AMAPAEGLRFVDPDTRMNPHTLQAALRAAGAAV 102

Query: 106 LTVEQALQSGVAI---HLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDS 162
           L  +  L         ++    HHA  D   GFC FN++A+    AL +  + +V  ID 
Sbjct: 103 LATDLVLAGEAPTAFCNVRPPGHHATRDAAMGFCFFNNVAVGIRHALDVHGLKRVARIDF 162

Query: 163 DVHHGDGTATLCAERDEIITLSFHCDKNFPARKPASS----MDVGYANQTGDEEFLSTFI 218
           DVHHG+G+A +  +   ++  S      +P           +++G  +++G + F +   
Sbjct: 163 DVHHGNGSADIFRDDGRVLMCSIFEKGLYPFAGEDDDGPRMVNIGLPSRSGGDAFRAAVT 222

Query: 219 QVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQAAIAQRDRFMLGLA 268
                A+    P L+   AG D H +D++G L + +   A   R ++ +A
Sbjct: 223 HHWLPALEAFAPQLVYVSAGFDGHREDDMGNLGLVENDYAWVTRKLMDVA 272