Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Variovorax sp. SCN45

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 125 HHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEIITLS 184
           HHA  +   GFC FN++AIAA  A+ +  +++V I+D DVHHG+GT  + +    ++ + 
Sbjct: 135 HHACREQAMGFCFFNNIAIAARHAIEVHGIERVAIVDFDVHHGNGTENILSNDPRVLMVG 194

Query: 185 FHCDKNFP---ARKPASSM-DVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
           F     +P      PA +M ++     T   +       V    +   +P ++   AG D
Sbjct: 195 FFQHPFYPYSGTDHPAPNMLNMPIPAYTKGMDVREMIEAVWMPRLEEFKPQMVFISAGFD 254

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESI-PIACVIGGGYREDHTA-LVPLHLELL 298
            H +D+LG L +++   A     +  +A++ +   I  ++ GGY  D  A  V  H+ +L
Sbjct: 255 AHREDDLGQLGLNENDFAWITGRVHDVARRHAKGRIVSMLEGGYNLDALARSVEAHIRVL 314