Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Sphingobium sp. HT1-2

 Score =  218 bits (556), Expect = 1e-61
 Identities = 119/294 (40%), Positives = 172/294 (58%), Gaps = 8/294 (2%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRI 60
           M+ +++HP Y       G +   +KY L+ + +           A    H P     S I
Sbjct: 1   MLHVVHHPAYVS-PATDGQQARFDKYGLVMDVLADSG-------APMTVHAPDPMPASWI 52

Query: 61  TRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHL 120
             +HDP YV+ +L   +   K RRIGFP ++ ++ R L S GGT L  + AL  G A + 
Sbjct: 53  AAVHDPAYVEEVLALAVPPEKERRIGFPVTERVMRRALLSPGGTWLAAKLALVHGYAANA 112

Query: 121 SGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEI 180
           +GG HHA AD G+G+C+FNDLAIAA+  ++     ++LI+D DVH GDGTA+L A R ++
Sbjct: 113 AGGSHHALADSGAGYCVFNDLAIAANRLIAEGDAHRILILDLDVHQGDGTASLMAGRGDV 172

Query: 181 ITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
            TLS H +KNFP RK  SS+D+G A+ TGD ++L+   +++   ++   PDLILY AGVD
Sbjct: 173 FTLSIHAEKNFPVRKARSSLDLGLADDTGDADYLAALGEMLPRVLDDFAPDLILYQAGVD 232

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
            H DD LG L++S   +A RD  ++  A   +IP+A  +GGGY  D  A+   H
Sbjct: 233 GHADDRLGRLALSDEGLAARDGLVMRQALARAIPVASCMGGGYGPDRMAVARRH 286