Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., Histone deacetylase family protein from Pseudomonas putida KT2440

 Score =  254 bits (648), Expect = 2e-72
 Identities = 129/293 (44%), Positives = 176/293 (60%), Gaps = 6/293 (2%)

Query: 2   IPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRIT 61
           +PLIYH  YS  + P  HR+P++K+RLL++ +V     ++  QA      P       + 
Sbjct: 3   LPLIYHEDYSP-EFPAEHRFPMDKFRLLHDHLVGSGLTTD--QALLR---PDICPNDILA 56

Query: 62  RLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHLS 121
             HD  Y++  + G LS    RR+G PWS+ L  RT+ +VGG+ LT E ALQ G+A HL+
Sbjct: 57  LAHDRSYIERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLA 116

Query: 122 GGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEII 181
           GG HHAH D  +GFC+FNDLA+ + + L    V +VLI D DVH GDGTA +  +  E I
Sbjct: 117 GGTHHAHYDHPAGFCIFNDLAVISRYLLEAGRVHRVLIFDCDVHQGDGTARILHDTPEAI 176

Query: 182 TLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVDI 241
           T+S HC++NFPARK  S  D+      GD  +L      +   + L++PDL+LYDAGVD+
Sbjct: 177 TVSLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDV 236

Query: 242 HNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLH 294
           H DD LGYL ++ A +A RD  +L       IP+  VIGGGY +D TAL   H
Sbjct: 237 HKDDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKDRTALARRH 289