Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., Acetylpolyamine amidohydrolase 1 from Pseudomonas sp. DMC3

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 36/208 (17%)

Query: 99  YSVGGTCLTVEQALQSGV----AIHLSGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSV 154
           YS     LT +  +Q G     A+    G HHA +D   G+C  N+ AIAA   L     
Sbjct: 129 YSAAQVALTAQAEIQRGARAAFALCRPPG-HHAASDLMGGYCYLNNAAIAAQAFLD-QGH 186

Query: 155 DKVLIIDSDVHHGDGTATLCAERDEIITLSF--HCDKNFPARKPASSMDVGYANQTGDE- 211
            KV I+D D HHG+GT ++  ER +++  S   H +  FP         +GY ++ G+  
Sbjct: 187 KKVAILDVDYHHGNGTQSIFYERSDVLFTSIHGHPEAEFP-------FFLGYDDERGEGA 239

Query: 212 ----------------EFLSTFIQVVEMAVNLHRPDLILYDAGVDIHNDDELGYLSISQA 255
                           +  S  +      +  +  D+I+   GVD   DD +    +   
Sbjct: 240 GEGFNFNYPLPAGSGWDVWSAALDQACDEIARYGADIIVVSLGVDTFKDDPISQFKLDSP 299

Query: 256 AIAQRDRFMLGLAKQESIPIACVIGGGY 283
                 + +  L K    P   V+ GGY
Sbjct: 300 DYLAMGKRIAALGK----PTLFVMEGGY 323