Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  190 bits (482), Expect = 5e-53
 Identities = 112/305 (36%), Positives = 160/305 (52%), Gaps = 15/305 (4%)

Query: 6   YHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRITRLHD 65
           Y+  +  L LP GHR+P+ KY  L E +V +       +A       + A    +  +H 
Sbjct: 18  YYADHFVLPLPSGHRFPMGKYARLRERLVGEVPGVHLCEA-------LPASRGELALVHT 70

Query: 66  PDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQ-SGVAIHLSGGY 124
           P Y++A+  G LS A  R IGFPWS  + ER   SVG T     +A+  +G+A +L+GG 
Sbjct: 71  PAYIEAVATGGLSPAAQREIGFPWSPAMAERARRSVGATLQACREAMGGAGLAANLAGGT 130

Query: 125 HHAHADFGSGFCLFNDLAIAAHFALS-------LPSVDKVLIIDSDVHHGDGTATLCAER 177
           HHA+AD GSGFC+FND A+AA    +            +V IID DVH G+GTA++ A  
Sbjct: 131 HHAYADKGSGFCVFNDFAVAARLMQAEHARLHRARGPLRVAIIDLDVHQGNGTASIFAND 190

Query: 178 DEIITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDA 237
             + TLS H  +NFP RK  S +DV   +   D  +L    + ++       P L+LY A
Sbjct: 191 ASVFTLSLHGARNFPFRKEPSDLDVELPDGCQDAAYLEALERALDELERRFDPGLVLYLA 250

Query: 238 GVDIHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLEL 297
           G D H  D LG L +S   +  RDR ++  A  + +P+A  +GGGY  D  A V + +  
Sbjct: 251 GADPHEGDRLGRLKLSFDGLEARDRRVMDWAWHKRVPLALAMGGGYGHDLEATVQVQVNT 310

Query: 298 LKAAL 302
            + AL
Sbjct: 311 YRTAL 315