Pairwise Alignments

Query, 306 a.a., histone deacetylase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  199 bits (505), Expect = 9e-56
 Identities = 105/301 (34%), Positives = 169/301 (56%), Gaps = 6/301 (1%)

Query: 1   MIPLIYHPIYSQLDLPVGHRYPINKYRLLYEEIVRQREQSEAWQASFEFHTPIAAELSRI 60
           M+ + + P Y+   LP GHR+P+ KY LL E+++      E   A+     P A     I
Sbjct: 1   MLKIAWSPKYAH-PLPAGHRFPMEKYELLPEQLLY-----EGTIAAHNLFEPNALSEEWI 54

Query: 61  TRLHDPDYVQALLEGTLSAAKMRRIGFPWSKPLIERTLYSVGGTCLTVEQALQSGVAIHL 120
              H   Y+Q L E +L+ +++R+ GFP S  L+ER ++ + G+      AL+ G+A+++
Sbjct: 55  VGPHKAGYLQKLTELSLTKSEIRKTGFPLSAALVEREIHIMDGSVQGCLFALKHGIAMNI 114

Query: 121 SGGYHHAHADFGSGFCLFNDLAIAAHFALSLPSVDKVLIIDSDVHHGDGTATLCAERDEI 180
           +GG HHA +D G GFCL ND+AI+A++ +      +VL++D DVH G+GTA +  +   +
Sbjct: 115 AGGTHHAFSDRGEGFCLLNDIAISANYLVQKKLAKQVLVVDLDVHQGNGTAEIFKDNPAV 174

Query: 181 ITLSFHCDKNFPARKPASSMDVGYANQTGDEEFLSTFIQVVEMAVNLHRPDLILYDAGVD 240
            T S H   N+P  K  S +DV   ++ GDE ++    + +   ++   PD I+Y  GVD
Sbjct: 175 FTFSMHGAANYPLHKETSDLDVPLPDKVGDEFYIRKLKEHLPPLLDQVEPDFIIYQCGVD 234

Query: 241 IHNDDELGYLSISQAAIAQRDRFMLGLAKQESIPIACVIGGGYREDHTALVPLHLELLKA 300
           + + D+LG L +S     +RDR +L LA Q  +PI C +GGGY E  + ++  H    + 
Sbjct: 235 VLSTDKLGRLGVSIEGCKERDRLVLELAHQHELPIMCCMGGGYSEKISHIIEAHANTYRL 294

Query: 301 A 301
           A
Sbjct: 295 A 295