Pairwise Alignments

Query, 600 a.a., DUF3413 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., Inner membrane protein YejM from Alteromonas macleodii MIT1002

 Score =  188 bits (477), Expect = 5e-52
 Identities = 151/595 (25%), Positives = 264/595 (44%), Gaps = 111/595 (18%)

Query: 11  RVSRLVGWGHWFAFFNIIAAMLIGTRYISQSPWPETLLGQLYLALSWVGHFGFLVFALYL 70
           RV++LV WGHWFA  NII A++I + ++  SP P T +G LYL  +W GH GF+ F  ++
Sbjct: 11  RVTKLVNWGHWFALANIIIAIVIASIFVFSSPMPGTGVGTLYLLANWFGHIGFMTFFGFV 70

Query: 71  LVLFPLTFIIPSRSLFRFLAVCFSTLGLTVLLIDTQAYQIINLHLNPVVWELLFSDETSS 130
           + + PL +++ +  + +  A   + +GL +L  D   +     H++    +LL S+  S+
Sbjct: 71  IFILPLCYLVNNPRVIKVSASIIAAVGLALLAFDALLFNRTGFHISFHAADLLRSEAQST 130

Query: 131 VSADLQHLFVVLPLIFLLELG----LSEWVWRKQRKLSHKRIGRPLAAVFFFSFIASHLI 186
           ++ +    +  L L+F++ LG    L+  +W++  + +  ++G P+   F   F+ SH I
Sbjct: 131 MAIESWQQWAFLFLLFIVWLGFQLVLANAIWKRVERFTRHKVGIPVTTFFVSCFVTSHAI 190

Query: 187 YVWSDAYLYSPVTSQRANFPLSYPMTAKSFMEKHGLLDKEEYSKRLAEQ-NSDIDGLIYP 245
           +VW+DA LY P+  Q   FPLSYP TAK+ M ++GLLD   Y +R   Q N DI  + YP
Sbjct: 191 HVWADAKLYQPIIKQDNMFPLSYPATAKTTMSRYGLLDLAAYEERKQLQFNPDIHNITYP 250

Query: 246 LEPLEFSRRAN-NLNVLIVSINNLRADALTPELMPNTYQFANENLNFTNHYSSSNDMFGL 304
            EP+  S   N NL V++ + N    D     +  NT           N+YS+++ + GL
Sbjct: 251 AEPVYCSIETNRNLTVVVQTDNEQVVD--LSNIKRNTLN------KVANYYSTASSIEGL 302

Query: 305 F-GLFYGLPSTYASSVRVQGNAPLLIDVMKKNDYQFGLFSGNNFADPLYKETMFRSLPIE 363
                +G+P  Y  ++                                 K  +  +LP+ 
Sbjct: 303 MTTTLFGVPEIYQDALS-------------------------------QKRPVLLALPLG 331

Query: 364 A---IAVTNDESSPDEQAVQRWAEWLNVGQKQPWFSYLELTTVEEFSELSSAQESAEDRL 420
           +   +++ +DE+ P  Q           G  QP                     +  D L
Sbjct: 332 SGMPVSIHSDEALPLPQL---------AGYLQP-------------------LSNNHDGL 363

Query: 421 RSAYNLSVTQADQVINTVLEQLNSLKLMDNTVVVITSNHGTEFNETKTNTWGSNTNYSRY 480
             A+  S      V NT+  + +         V++ +  G+E         G  T YS  
Sbjct: 364 HIAFLKSADIESYVKNTLARKHD---------VIVATGFGSES--------GKGTLYSTL 406

Query: 481 QLQVPMVIHWPGKVAGTYAHRSSHLDFSVTLMQDLLGVSSNPVDYSSGKNLFNESKRKWI 540
           +L                A  +S  D + T++   LG ++    YS+G++L + S R W+
Sbjct: 407 KLN---------------ASLASTEDLAPTIL-GALGCNAPATFYSTGQSLLSPS-RPWL 449

Query: 541 LAGDARELALITDTQTTVLDKFGNFKVYDGDYQRLKETNPTLPVLMQGLTELQRF 595
           ++     + +  D + T +   G++++ D    +  +    + +L Q +  L RF
Sbjct: 450 VSTSGERIVVFHDNKRTDVLSNGSYEISDMATGKRSKEALNVDLLSQAIKHLSRF 504