Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., nucleoid-associated protein NdpA from Sphingobium sp. HT1-2

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 67/327 (20%), Positives = 147/327 (44%), Gaps = 16/327 (4%)

Query: 10  LHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKS------DSE 63
           +H L ++D    V   +      DT T  +++ ++ ++N++  K  G F +      + +
Sbjct: 9   IHDLNRSDAGYSVALSKKLLDVTDT-TLRVISTVYELYNSRTSKSHGRFTTAEGSPTEGQ 67

Query: 64  FQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIGLLP 123
            + +++   +    F   + +    L  E  K   +  G +  A ++   +D++ + ++ 
Sbjct: 68  IRAYVEAKEKD---FLGLTGKMMDNLAREAGKKSASVGGHVFFAHFRRDGSDFMLVTVVT 124

Query: 124 LNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKGRVGRKVADFF 183
              S  +T+   +   ++LD++      RI+L+++  DK+  RYLS++KG+    ++D+F
Sbjct: 125 DKLSAALTKNHGMEDVEHLDLDGFRFAGRINLTAW-ADKQD-RYLSFLKGK--GSISDYF 180

Query: 184 LDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDEVRV 243
            DFL  D  +  ++  Q L+ A+++F    K    E  ++     +Y     KA + V  
Sbjct: 181 RDFLGCDSAVLERKDTQSLVDALKEFTLTEKMVDTEATAFLSDALDYLGKANKAKEPVDF 240

Query: 244 QELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDSLLL 303
           + ++  L P   G     F      QL E +  + S ++ L K        ++ F    +
Sbjct: 241 EAMANRLMPKEPG-RLSKFLANTDRQLNEGYVPNASALKALVKVTAKTKMWSVEFTREAI 299

Query: 304 GE-RVFYDPETDTLTIKGTPPNLRDQL 329
            + +V +D +  +LT+   P  L +Q+
Sbjct: 300 DQSKVVFDKDKKSLTLMDVPDELINQM 326