Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Nucleoid-associated protein NdpA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  353 bits (905), Expect = e-102
 Identities = 180/331 (54%), Positives = 244/331 (73%), Gaps = 2/331 (0%)

Query: 1   MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKS 60
           MSL ++ + LHQL K D   L +  R   L   T+   +VAELHRV++AK  K +G F  
Sbjct: 1   MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTTTVVEMVAELHRVYSAK-NKAYGLFNE 59

Query: 61  DSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIG 120
           +SE    L+  R+G   F  FS+ +  RL++ELAKYPFAD GI++   Y+ LA +YL + 
Sbjct: 60  ESELAQALRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGIVLFCHYRYLAVEYLLVT 119

Query: 121 LLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKGRVGRKVA 180
           +L    S++V E LDI+ T YLDIN  DIVARIDL+ +ET+ +S RYL+++KGRVGRKVA
Sbjct: 120 VLNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETNPQSTRYLTFLKGRVGRKVA 179

Query: 181 DFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDE 240
           DFF+DFL A  GL+ K QN+ L+QAV+DF A+A+ +K E  + ++QVY YCN+Q++AG+E
Sbjct: 180 DFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAERQNVRQQVYSYCNEQLQAGEE 239

Query: 241 VRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDS 300
           + ++ LS EL   +E V+F +FT E+GY+LEESFPADRST+R+LTKY G+GGGL ++FD+
Sbjct: 240 IELESLSKELSGVSE-VSFSEFTAEKGYELEESFPADRSTLRQLTKYAGSGGGLTINFDA 298

Query: 301 LLLGERVFYDPETDTLTIKGTPPNLRDQLTR 331
           +LLGER+F+DP TDTLTIKGTPPNLRDQL R
Sbjct: 299 MLLGERIFWDPATDTLTIKGTPPNLRDQLQR 329