Pairwise Alignments

Query, 333 a.a., nucleoid-associated protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., Nucleoid-associated protein YejK from Alteromonas macleodii MIT1002

 Score =  226 bits (575), Expect = 9e-64
 Identities = 127/363 (34%), Positives = 198/363 (54%), Gaps = 32/363 (8%)

Query: 1   MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKS 60
           MS  + + ++H+L  N  +++    R   L      E L  +++  FNAK GKG G F +
Sbjct: 1   MSALIHHFVVHRLIVNKEEKIEAIPRDNCLAVTPEIELLAHQINHSFNAKPGKGVGHFVT 60

Query: 61  D---------SEFQLWLQEMRRGTLPFYE----------------------FSQQSAQRL 89
           +          E +   Q+       F E                      FS  +  RL
Sbjct: 61  EVTREAKVENEEGEATTQKSTENVAEFAEGLKQYMDIQKAAGDNVEDAFHSFSVSATNRL 120

Query: 90  KNELAKYPFADEGILVMAEYQSLATDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDI 149
              LA+    + G L+  +Y+ LAT YL I LL     ++VT  LD+SA ++LD+ KM +
Sbjct: 121 VRTLAETGTVETGFLIFCQYEYLATQYLMIALLNTRSHVEVTNSLDLSAREHLDLAKMQL 180

Query: 150 VARIDLSSYETDKESKRYLSYIKGRVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDF 209
             R DL+ ++   E +RY+S+IKGR+GRKV+DFF+ F+  +  +D KQQN+ L+ +V+ +
Sbjct: 181 AVRFDLTQWDIQPEQQRYVSFIKGRMGRKVSDFFMQFVGCEELVDVKQQNKQLISSVDAY 240

Query: 210 CADAKFEKEEVISYKKQVYEYCNDQIKAGDEVRVQELSGELPPSNE-GVNFFDFTREQGY 268
            A    + +E   ++++V  Y  ++I AG+ + V EL+  LP + E   NF  FT+    
Sbjct: 241 LASESLDPQEQHQHREEVKSYFKEKIDAGESLSVDELANRLPQNEETSSNFSAFTQSMEV 300

Query: 269 QLEESFPADRSTVRKLTKYVGAGGGLNLSFDSLLLGERVFYDPETDTLTIKGTPPNLRDQ 328
            LE+    D + +++L K+ G GGG++LSF+  L+G+RVFYDP TDTLTI+G PPNL+DQ
Sbjct: 301 PLEKEIQPDPAALKQLAKFTGQGGGISLSFERKLMGDRVFYDPATDTLTIRGIPPNLKDQ 360

Query: 329 LTR 331
           L R
Sbjct: 361 LNR 363