Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 1095 a.a., Ribonuclease E from Xanthobacter sp. DMC5

 Score =  387 bits (995), Expect = e-111
 Identities = 265/789 (33%), Positives = 390/789 (49%), Gaps = 100/789 (12%)

Query: 90   IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-ER 148
            I++V+   Q ++VQ+ KEERG+KGAALTT++SLAG Y VLMPN  R GGISR+I    +R
Sbjct: 373  IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDR 432

Query: 149  TELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPFLIH 208
              LK  +  LE+P+GMG+I+RTAG  ++  E++ D   LL+ W  +++ + S+ AP L++
Sbjct: 433  KRLKEVVQDLEVPEGMGIILRTAGANRTKTEIKRDFEYLLRLWETVREMTLSSTAPSLVY 492

Query: 209  QESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHF 268
            +E ++I RAIRD   +DI +I +     +  A + +R++ P     V  Y    P+F+ +
Sbjct: 493  EEGSLIKRAIRDLYNKDIDDIHVAGEEGFREARDFMRMLMPSHAKSVMPYREPQPIFARY 552

Query: 269  QIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADE 328
             +E Q+++ F   V+L SGG IVI+PTEAL SID+NS RAT+   IE+TAL TNLEA++E
Sbjct: 553  GVEQQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNLEASEE 612

Query: 329  IARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMSR 388
            IARQLRLRDL GL+VIDFIDM   R+ R VE +L++ ++ DRAR+QIGRIS FGLLEMSR
Sbjct: 613  IARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQIGRISHFGLLEMSR 672

Query: 389  QRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIAS 448
            QR+   + E+S  +CP C GTG +R   S++L +LR +EE+ L+  T  ++A     +A 
Sbjct: 673  QRIRTGVLESSIEVCPHCGGTGHVRSAASVSLQLLRALEEQLLRSQTHNLIARTRTEVAL 732

Query: 449  YLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAMK 508
            Y+LN+KR  +  +E+   V +++  +  + T H   I + +G+                 
Sbjct: 733  YVLNQKRAHLRELEERFSVTLSVAADESV-TGHQPFI-IEKGD----------------- 773

Query: 509  EAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVQQPAQPGFFSR 568
                                     AAPA A  AP P    +P  +   +   +      
Sbjct: 774  ------------------------LAAPAPA--APRPSTVVQPDSILPDEDFLEED-EEE 806

Query: 569  VFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNEENNE 628
            + +   +   A  EA++     T ++ + K RR R  R  DR           G EE++ 
Sbjct: 807  IVEEAETEAEAEAEASEGNGERTDDAGR-KRRRRRRRRRGDREEGRESAEGAEGEEEDDT 865

Query: 629  RNDKE-----TSNSNRKPQERKPKQERGE----RNERND--RNERPETERPERQDRRNKR 677
              +       T + N +  + +  +ERGE      ER+D    +R    R  R  RRN+R
Sbjct: 866  SAEAAEAQDGTRDENAREDDERDDEERGEDERADGERSDDENGDRRRRRRGRRGGRRNRR 925

Query: 678  DESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEEL 737
            +    A     G    +E   + + V  + E AA                V     AE  
Sbjct: 926  ERDDDAPGSADGESDGSEESDDEQPVAAEAEVAAA--------------PVTAPTFAEAP 971

Query: 738  DNLSTAPVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRRSPRHLRASGQRRRR 797
              +   PV  A   PAP   PVT    +SA+                      +  RRRR
Sbjct: 972  AEVRAEPVAEAPATPAPTPEPVT----ESAE----------------------AAPRRRR 1005

Query: 798  GRDRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAV 857
               R   P  L +GG+A+P   +    P  + A  P       E A         AA   
Sbjct: 1006 STIREKAPVILSEGGIATPVAPVAAEAPS-EPAAEPAPELAATEAAAPEAAAPAPAAEPA 1064

Query: 858  VESEKVAAP 866
               E  AAP
Sbjct: 1065 PAPETPAAP 1073



 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 3  RMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGA 62
          +MLI+AT  EE RV +V G R+ + D ES   +  + NIY  ++TR+EPSL+AAF++YG 
Sbjct: 4  KMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYGG 63

Query: 63 ERHGFLPLKEIAREYF 78
           RHGFL   EI  +Y+
Sbjct: 64 NRHGFLAFSEIHPDYY 79



 Score = 40.8 bits (94), Expect = 5e-07
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 541 PAPTPKPKAEPQPVAEVQQPAQPGFF--SRVFKAIASL---FSATPEAAKVEAPVTQNSE 595
           P P P+ +A     A  ++ A  G    + + +  A L    + T    + EAP ++  E
Sbjct: 208 PLPAPQEQASDDEEALRRREAAEGESDPAPILEGDAVLREEVTVTSAPGEDEAPQSETDE 267

Query: 596 QDKPRRERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQERGERNE 655
            D    E ++          D++    +E + E+  +ET+   R   E +P+  R  R  
Sbjct: 268 DDHAEEEDDE--------DEDEDEEDSDEASEEKAPEETAREERSDDEEQPRSRR-HRGR 318

Query: 656 RNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEKAAVVKE 715
           R+DR    + +  E     ++ DE +  + L        E  +       +  K   V  
Sbjct: 319 RHDRKRDKDEDEDEDDSDVDQIDEEEEIEHLGADEDALEEVPERAPQRRARSYKIQEVIR 378

Query: 716 RRQ 718
           RRQ
Sbjct: 379 RRQ 381



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 9/144 (6%)

Query: 642 QERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVK 701
           +ER  +    E + ++ R ER   +R +     +   E       E G   AA+  +  +
Sbjct: 93  EERAARLAEDEADLKDRRRERSRAKRSQPDQSISTAAEPVEHPAPEAGEAPAADGFEAAE 152

Query: 702 AVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAE-ELDNLSTAPVDNAFDAPAPVNLPVT 760
              P ++ A                     L A  E    + A V+ A DAP    LP  
Sbjct: 153 DAAPVQDTATEAPFETPEASSGHHAEPMSALVAPAEAAEAAAAVVEAAIDAPLGTPLP-- 210

Query: 761 DDFADSAQEDNEQDDQKQRRNRRS 784
                 A ++   DD++  R R +
Sbjct: 211 ------APQEQASDDEEALRRREA 228