Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1048 a.a., ribonuclease E from Pseudomonas simiae WCS417
Score = 806 bits (2081), Expect = 0.0
Identities = 511/1091 (46%), Positives = 645/1091 (59%), Gaps = 99/1091 (9%)
Query: 4 MLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
MLINATQ EELRVALVDGQRL+DLDIES E KKANIYKGRITRIEPSLEAAFVD+G+E
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60
Query: 64 RHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFISLA 123
RHGFLPLKEI+REYF + +GR NIKDVL+EGQEVIVQ+EKEERG+KGAALTTFISLA
Sbjct: 61 RHGFLPLKEISREYFKK--APEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLA 118
Query: 124 GSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEELEWD 183
G YLVLMPNNPRAGGISRRIEG+ER EL+ AL+ L P MGLIVRTAG+G+S+EE++WD
Sbjct: 119 GRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWD 178
Query: 184 LNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERALEH 243
L+ LL+ W+AIK+AS APFLI+QESNVI+RAIRDYLR+DIGE+LIDS + AL
Sbjct: 179 LDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTF 238
Query: 244 IRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI 303
IR V P + +++K YE VPLF+ FQIESQIE+AFQR V LPSGGSIVIDPTEAL SIDI
Sbjct: 239 IRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDI 298
Query: 304 NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLR 363
NSARATKG DIEETAL TNLEAA+EIARQLRLRD+GGL+VIDFIDMTP ++QR VE ++R
Sbjct: 299 NSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVR 358
Query: 364 EAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVL 423
E + DRARVQ+GRISRFGLLEMSRQRL PSL E+S +CPRC GTG+IRD ESL+L++L
Sbjct: 359 ECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAIL 418
Query: 424 RLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFE 483
RLIEEEALKD T++V A VP+ +A++LLNEKR SI IE + RI I+PN +ETPHFE
Sbjct: 419 RLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFE 478
Query: 484 VIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAEA-VPA 542
V R+R+ + + A E E E++P +++ AA A A
Sbjct: 479 VQRLRDDSPEAHSGQSSYEIAAAAAEVE-------EVQPAAATRTLVRQEAAVKTAPARA 531
Query: 543 PTPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAK---VEAPVTQNSEQDKP 599
P P PVA +P F + K++ SLF+ E VE P T+ +++
Sbjct: 532 NAPVPTEVAAPVAAPAALPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEE 591
Query: 600 RRERNDRNNDRRRNPRDKNRRRGNEENNERNDK--ETSNSNRKPQERKPKQERGERNERN 657
R RN R R RN R R+ EE R ++ + R+P+E P ER R ER
Sbjct: 592 R--RNGRQQSRNRNGRRDEERKPREERAPREERAPREERAPREPREETPTVERAPREER- 648
Query: 658 DRNERPETERPERQDRRNKRDESKTAKLLEQGRQLA------AEAQQEVKAVEPKEEKAA 711
P T R R+DR+ + + + + L + A A A +E A +P+EE+A
Sbjct: 649 ----APRTPRAPREDRKPRGEREERVRELREPLDAAPAAAGVAVAAEERPARQPREERAP 704
Query: 712 VVKERRQRR--KLSKQIRVKDQLAAEELDNLSTAPVDNAFDAPAPVNLPVTDDFADSAQE 769
+E RQ R + +Q R + AA + + L+ + QE
Sbjct: 705 --REERQPRAPREERQPRAEQAAAASDEEVLTG---------------------EEQLQE 741
Query: 770 DNEQDDQKQRRNRRSPRHLRASGQRRRRGRDRRPNPF-------RLRKGGVASP---EMA 819
D ++ + R RRS R R RR R RD N + + P E+A
Sbjct: 742 DGQEGAEGDRPRRRS-RGQRRRSNRRERQRDANGNVIEGSEETGENTEAATSEPTGAELA 800
Query: 820 MG-----KVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVVESEKVAAPRVLGGVAF 874
G V AP HE AE A T T V E+ V AP V VA
Sbjct: 801 AGLAVTAAVASSVISAPAEAQAHEQAERATAAVEDTVTVEAPVAETPAVEAPAVEAPVAE 860
Query: 875 PEMAMGKVIVRRETAAVQPEPVVQEPVITDV-------------IAETLIAPV---EPVV 918
+ + E V+ ++ P + +V +A APV +PVV
Sbjct: 861 TPVVEASAV---EAPVVEATTPIEAPAVPEVEVAPVQEAQPEIEVAAVEQAPVVEPQPVV 917
Query: 919 VEATVIEAPVIEESATETAALETVVAKVAEVE--EPATISDEVVAQTTVEVIAD--KMAE 974
A V AP + E E A + A VE EPA + +E A V+A+ + E
Sbjct: 918 EAAVVEAAPEVREVREEQTAFQWTAEPAAPVEAPEPAPVVEEAPAPVAEVVVAEPTPVVE 977
Query: 975 PIKVVKPVTVSATSLTAKA---VIQQPYASSPMTKAPGSDDIREVQVNAAPLRAERYQAR 1031
P VV+P V + A+ V++ S+ +D REV+ R E A
Sbjct: 978 PAPVVEPAPVVEAPVVAEVAAPVVEAAPVSALTENGRAPNDPREVRRR----RKEAEAAA 1033
Query: 1032 GAGSQVARNQA 1042
A +Q A +++
Sbjct: 1034 AAAAQEAEHES 1044