Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1068 a.a., Ribonuclease E (EC 3.1.26.12) from Variovorax sp. SCN45
Score = 684 bits (1764), Expect = 0.0
Identities = 446/1047 (42%), Positives = 601/1047 (57%), Gaps = 102/1047 (9%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ EE R+A+VDGQ+L D +IE G E +K NIYK +TR+EPSLEA FVDY
Sbjct: 1 MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
G +RHGFLP KEI+++YF +G S + I+D + EGQE+ VQ+EKEERG+KGAALTTFI
Sbjct: 61 GEDRHGFLPFKEISKQYFAEGVS-ASQARIQDAIREGQELTVQVEKEERGNKGAALTTFI 119
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAG Y+VLMPNNPR GG+SRRIEGD+R ELK A+ LE P+GM +I RTAG+G+SA EL
Sbjct: 120 SLAGRYVVLMPNNPRGGGVSRRIEGDDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPEL 179
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDLN LLK WSAI A+ FLI+QES++++RAIRDY DIG+ILID++ IY++A
Sbjct: 180 QWDLNYLLKLWSAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDIYDQA 239
Query: 241 LEHIRLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS 300
+ + V P+ RVK+Y + LFS FQIE QIESA+ R V+LPSGG+IVID TEAL S
Sbjct: 240 QQFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVS 299
Query: 301 IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN 360
+D+NSARA KGGDIEETA TNLEAADE+ARQ+RLRDLGGL+VIDFIDM +++REVE+
Sbjct: 300 VDVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMDESKNRREVES 359
Query: 361 RLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLAL 420
RLR+A+R DRARVQ G IS+FGL+EMSRQRL P+L+E S CPRC G+G IRD ES AL
Sbjct: 360 RLRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSAL 419
Query: 421 SVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQVRITIVPNSDMETP 480
+LR+I+EE++KDNT+ V VPV +AS+LLNEKR I IE Q+V + +VPN +ETP
Sbjct: 420 QILRIIQEESMKDNTAAVHVQVPVEVASFLLNEKRPEIAKIELKQRVTVLMVPNKTLETP 479
Query: 481 HFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFA--APAE 538
++++ R++ + + L ++ A + + V +P + PV+KG APA
Sbjct: 480 NYKLERLKHDDPR--LDHIEASYKMADEIEDPTSVTRRSQEPTNKQTPVIKGVLPDAPAP 537
Query: 539 AVPAPTPKPK-------AEPQPVA----EVQQPAQPGFFSRVFKAIASLFSATPEAAKVE 587
VP PKP+ A P PVA PAQ GFFS I +LF TP A
Sbjct: 538 VVP---PKPEAVRAPAAAAPAPVAPPVVTAPVPAQTGFFS----WIKNLFGGTPAPAPAP 590
Query: 588 APVTQNSEQDKPRRE-RNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKP 646
AP E KPRR+ R R+ + R RD +RRG R + +
Sbjct: 591 APAAIPVEPPKPRRDGRPGRDGEARGGSRDGEQRRGGRGGEGRGEGRNAEG--------- 641
Query: 647 KQERGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAV-EP 705
+ E G R+ D ER ER++ R R+ +++L G Q+E + EP
Sbjct: 642 RGEGGGRSGGRD-GERRGGRGGERREGREGREGRNSSELRADGAPQQPREQREPREQREP 700
Query: 706 KEEKAAVV----KERRQRRKLSKQIRVKD--QLAAEELD---NLSTAPVDNAFDAPAPVN 756
+E + A ++RR R ++ +D AE LD NL + + + A
Sbjct: 701 REPREARAPRDGEQRRNGRGERREGEGRDGRNAPAEALDGNLNLEAQQLASGEEGNAGER 760
Query: 757 LPVTDDFADSAQEDNEQDDQKQRRNRRSPRH----------------LRASGQRR-RRGR 799
P E NE+ ++ +R + R+ R+ A G+R+ R GR
Sbjct: 761 APRARGERRERGERNERGERGERNSDRAERNGDAQQPRGETALAGEDAAAQGERQPRNGR 820
Query: 800 DRRPNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVV- 858
D + P R +GG E G+ R D AP+ ++ AE A T A
Sbjct: 821 DEQRAP-RGERGGERG-ERNDGRRERRND-APQAEADGRGAEAAAADVEQTNDAGNEQAP 877
Query: 859 --------------------------ESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQ 892
E+E A + VA E A V+ E A +
Sbjct: 878 RREGDERRGRSRDRYGRDRRERGPRDENEAGAQAAEVAEVAVAEAATTTADVQEEAPAPR 937
Query: 893 PEPVVQEPVITD---VIAETLIAPVEPVVVEATVIEAPVIEESA-TETAALETVVAKVAE 948
+P Q P+ ++ V+AE ++A PV APV A + E + ++A+
Sbjct: 938 HQPQQQLPLASEQQAVVAEAVVA--APVAAAPVAAPAPVANGRALPKVQPFELPLDELAQ 995
Query: 949 VEEPATI----SD-EVVAQTTVEVIAD 970
+ + + + SD E +AQ + A+
Sbjct: 996 IAQNSGLQWVNSDAERIAQARAAIAAE 1022