Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 913 a.a., ribonuclease E/G from Magnetospirillum magneticum AMB-1

 Score =  393 bits (1009), Expect = e-113
 Identities = 275/821 (33%), Positives = 418/821 (50%), Gaps = 122/821 (14%)

Query: 90  IKDVLNEGQEVIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDER 148
           I++V+   Q ++VQ+ KEERG+KGAALTT++SLAG Y VLMPN  R GG+SR+I    +R
Sbjct: 177 IQEVVKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDR 236

Query: 149 TELKSALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPFLIH 208
             LKS  + +++P GM +I+RTAG  +S  E++ D   LL+ W ++++ +  + AP L++
Sbjct: 237 RRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVY 296

Query: 209 QESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEV-PLFSH 267
           +E+++I R+IRD   RDI E+L+D +  Y  A +++R++ P    +V+ Y+  V P+F  
Sbjct: 297 EEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFHR 356

Query: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAAD 327
           +Q+E+Q+++     V+L SGG IVI  TEAL +ID+NS RATK   IEETAL TN+EAAD
Sbjct: 357 YQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAAD 416

Query: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
           E+ARQLRLRDL GL+VIDFIDM   R+   VE R++EA++ DRAR+Q+G+IS FGLLE+S
Sbjct: 417 EVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRMKEALKNDRARIQVGKISAFGLLELS 476

Query: 388 RQRLSPSLAEASHHICPRCKGTGVIRDNESLALSVLRLIEEEALKDNTSQVLAVVPVSIA 447
           RQRL PSL E +   CP C GTG++R  ES A+ +LR IEEE ++  +S++   VP +IA
Sbjct: 477 RQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEITVYVPTAIA 536

Query: 448 SYLLNEKRRSINHIEKAQQVRITIVPNSDMETPHFEVIRVREGEEQDVLSYLIPKKLEAM 507
            Y+LN+KR ++  IE+  +  + +  +  +  P F + +V+     D      P+   +M
Sbjct: 537 LYILNQKRSALAAIEERYEFDVLLSGDDTLIPPAFRMDKVKAEFRPDE----PPRAAISM 592

Query: 508 KEAEGKEVVDVELKPKRIEEPVLKGFAAPAEAVPAPTPKPKAEPQPVAEVQQPAQPGFFS 567
            +A  +                           P   P+P+   +   E ++ AQP   S
Sbjct: 593 DDAAHR---------------------------PPAEPEPEEAEEEDDEDEEEAQPERSS 625

Query: 568 RVFKAIASLFSATPEAAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNE--E 625
           R              A +       +SE  + RR    R   RRR P D    +  E   
Sbjct: 626 R--------------AREERGEEDPDSEAGRKRR----RRRRRRRKPGDDRPEQDGEAVA 667

Query: 626 NNERNDKETSNSNRKPQERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAKL 685
            +E+   E  +S     E +  +   E      R E  + ++P R+ RR +R   +  + 
Sbjct: 668 GDEQPRAEGESSAEGEAESEDDEGDAEGEGEGTRTEGGDDDQP-RKRRRGRRGGRRRRRR 726

Query: 686 LEQGRQLAAEAQQ--EVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEELDNLSTA 743
             +G    AEA +  E    +  E +                    + + A E + ++ A
Sbjct: 727 DGEGEGEGAEAGEGGETAGADGAEGEGV------------------EGVTAPEAETVAAA 768

Query: 744 PVDNAFDAPAPVNLPVTDDFADSAQEDNEQDDQKQRRNRRSPRHLRASGQRRRRGRDRRP 803
           P D A +  A     V ++ A +A+E               P+  RA  +++   +    
Sbjct: 769 PQDAAAEEAA----AVVEEAAPAAEE--------------KPKRKRAPAKKKAEAKP--- 807

Query: 804 NPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVVESEKV 863
                 +G       A  +  P+   AP  +     AE A         A  AV+E    
Sbjct: 808 ------EGAAPEEAPATAEEKPKRKRAPAKKKVDAKAEAA--------PAEIAVIE---- 849

Query: 864 AAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVV--QEPVI 902
            AP     VA PE      +V  E  A  PEPVV  +EPVI
Sbjct: 850 -APVAESVVAEPE------VVAAEPVAAAPEPVVVAEEPVI 883



 Score = 89.0 bits (219), Expect = 1e-21
 Identities = 42/78 (53%), Positives = 55/78 (70%)

Query: 1  MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
          +KRMLI+AT  EE RV +V+G RL +LD+E+      K NIY  ++ R+EPSL+AAFV+Y
Sbjct: 2  VKRMLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEY 61

Query: 61 GAERHGFLPLKEIAREYF 78
          G  RHGFL   EI  +YF
Sbjct: 62 GGNRHGFLAFSEIHPDYF 79