Pairwise Alignments

Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056

Subject, 1067 a.a., Ribonuclease E (EC 3.1.26.12) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  998 bits (2580), Expect = 0.0
 Identities = 602/1108 (54%), Positives = 727/1108 (65%), Gaps = 102/1108 (9%)

Query: 1    MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
            MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHE KKANIYKG+ITRIEPSLEAAFVDY
Sbjct: 1    MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60

Query: 61   GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
            GAERHGFLPLKEIAREYFP  YS  GRPNIKDVL EGQEVIVQI+KEERG+KGAALTTFI
Sbjct: 61   GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120

Query: 121  SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
            SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL+SLELP+GMGLIVRTAGVGKSAE L
Sbjct: 121  SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180

Query: 181  EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
            +WDL+  LKHW AI++A++S PAPFLIHQESNVIVRA RDYLR+DIGEILID+  + E A
Sbjct: 181  QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA 240

Query: 241  LEHI-RLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
             +HI  L RPDF +++K Y GE+PLFSH+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241  RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300

Query: 300  SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
            +IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE
Sbjct: 301  AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360

Query: 360  NRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLA 419
            NRLREAVR DRAR+QI  ISRFGLLEMSRQRLSPSL E+SHH+CPRC GTG +RDNESL+
Sbjct: 361  NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420

Query: 420  LSVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQ-VRITIVPNSDME 478
            LS+LRLIEEEALK+NT +V A+VPV IASYLLNEKR ++N IE  Q  VR  IVPN  ME
Sbjct: 421  LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME 480

Query: 479  TPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAE 538
            TPH+ V+RVR+GEE   LSY++PK  E   EA      +   + KR E+P L  FA P +
Sbjct: 481  TPHYSVLRVRKGEETPTLSYMLPKLHE---EAMALPSEEEYAERKRPEQPALATFAMP-D 536

Query: 539  AVPAPTPKPKAEPQPVAE-----VQQPAQPGFFSRVFKAIASLFSA----TPEAAKVEAP 589
              PAPTP   A     A+       QPAQPG FSR   A+  LFS     T E A  +A 
Sbjct: 537  VPPAPTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAE 596

Query: 590  VTQNSEQDKPR-RERNDRNNDRRRNPRDKNRRRG---NEENNERNDKETSNSNRKPQERK 645
                 +QD+ + R+ N R+ + RR+ RD    R    + ++N RN ++T   N + ++ +
Sbjct: 597  EKAERQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQTQQQNAEARDTR 656

Query: 646  PKQERGERNERNDRNERPETERPERQDRRN--KRDESKTAKLLEQGRQLAAEAQQEVKAV 703
             +QE  E+ +  D  E+ +T R ER  RRN  KR   +  K L +  Q   E +Q     
Sbjct: 657  -QQETAEKVKTGD--EQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQ----- 708

Query: 704  EPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEELDNL----STAPVDNAFD-APAP---- 754
               EE+   V+ RR++R+L++++R  +    E +D         PV+N     PAP    
Sbjct: 709  ---EERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTEL 765

Query: 755  --VNLPVTDDFADSAQEDNEQDDQ--KQRRNRRSPRHLRASGQRRRRGRDRR-----PNP 805
              V+LPV  D A    +  E  D     RR+RRSPRHLR SGQRRRR RD R     P P
Sbjct: 766  AKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 825

Query: 806  FRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVVESEKVAA 865
              +     ASPEMA GKV  RY +  RPQ                    T VV+ ++ A 
Sbjct: 826  LTV---ACASPEMASGKVWIRYPIV-RPQE-------------------TQVVDEQREA- 861

Query: 866  PRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVITDVIAETLIAPVEPVVVEA---- 921
                  +A P+  + +  V   TAA++P+  VQ      V  +T+  P  P VVE     
Sbjct: 862  -----DLALPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQTVAEPQAPEVVEVETTH 916

Query: 922  -TVIEAPVIEE----SATETAALETVVAKVAEVEEPA----TISDEVVAQTTVEVIADKM 972
              VI APV E+    + ++T   + V+A    V E A    T+++ V     VE   +  
Sbjct: 917  PEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVAENVADVVVVEPEEETK 976

Query: 973  AEPI--------KVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNAAPLR 1024
            AE           V+ P  V   S     V    +AS+PMT+AP  + + E   ++   R
Sbjct: 977  AEAAVVEHTAEETVIAPAQVVEKSQDVVCVDDHNHASAPMTRAPAPEYVPETPHHSDWQR 1036

Query: 1025 AE-RYQARG-AGSQVARNQASAGMSKPQ 1050
                ++ +G AG   A   ASA  ++PQ
Sbjct: 1037 PSFHFEGKGAAGGHSATRHASAPATRPQ 1064