Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1061 a.a., fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) from Escherichia coli BW25113
Score = 1009 bits (2609), Expect = 0.0
Identities = 597/1098 (54%), Positives = 724/1098 (65%), Gaps = 88/1098 (8%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHE KKANIYKG+ITRIEPSLEAAFVDY
Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEIAREYFP YS GRPNIKDVL EGQEVIVQI+KEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL+SLELP+GMGLIVRTAGVGKSAE L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDL+ LKHW AIK+A++S PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A
Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240
Query: 241 LEHI-RLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
+HI L RPDF +++K Y GE+PLFSH+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300
Query: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE
Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360
Query: 360 NRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLA 419
NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRC GTG +RDNESL+
Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420
Query: 420 LSVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQ-VRITIVPNSDME 478
LS+LRLIEEEALK+NT +V A+VPV IASYLLNEKR ++N IE Q VR IVPN ME
Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480
Query: 479 TPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAE 538
TPH+ V+RVR+GEE LSY++PK E EA + + KR E+P L FA P +
Sbjct: 481 TPHYHVLRVRKGEETPTLSYMLPKLHE---EAMALPSEEEFAERKRPEQPALATFAMP-D 536
Query: 539 AVPAPT----------PKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEA 588
PAPT P PKA P A PAQPG SR F A+ +LFS E E
Sbjct: 537 VPPAPTPAEPAAPVVAPAPKAAP---ATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593
Query: 589 PVTQNSEQDKPRRERNDRNNDRRRNPRDKNRRR----------GNEENNERNDKETSNSN 638
P + + KP R++ DR R+ N RD+N RR N E N RN ++
Sbjct: 594 PAPK--AEAKPERQQ-DRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQT 650
Query: 639 RKPQERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQ 698
+ +E + + E E+ D + P ER R++ +KR + AK L Q E +Q
Sbjct: 651 AETRESRQQAEVTEKARTADEQQAPRRERSRRRN-DDKRQAQQEAKALNVEEQSVQETEQ 709
Query: 699 EVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEEL------DNLSTAPVDNAFDAP 752
EE+ V+ RR++R+L++++R + +A E + + ++ P+ +AP
Sbjct: 710 --------EERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPI--VQEAP 759
Query: 753 AP------VNLPVTDDFADSAQEDNEQDDQKQ----RRNRRSPRHLRASGQRRRRGRDRR 802
AP V LPV A QE+N D++ RR+RRSPRHLR SGQRRRR RD R
Sbjct: 760 APRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDER 819
Query: 803 -----PNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAV 857
P P + ASPE+A GKV RY + RPQ + Q HV P
Sbjct: 820 YPTQSPMPLTV---ACASPELASGKVWIRYPIV-RPQDVQVEEQREQEEVHVQP------ 869
Query: 858 VESEKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVITDVIAETLIAPVEPV 917
+ +E A + V+ P + +V +P+P V E +VIA + V
Sbjct: 870 MVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIA-AAVTEQPQV 928
Query: 918 VVEATVIEAPVIEESATETAALETVVAKVAEVEEPATI---SDEVVAQTTVEVIADKMAE 974
+ E+ V A + E A + A + EV E A + EVVAQ V+A+ AE
Sbjct: 929 ITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAE 988
Query: 975 PIKVVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNAAPLRAE-RYQARG- 1032
++ V V T ++ +A++PMT+AP + + E ++ R ++ +G
Sbjct: 989 -VETVAAVEPEVT-------VEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGA 1040
Query: 1033 AGSQVARNQASAGMSKPQ 1050
AG A + ASA ++PQ
Sbjct: 1041 AGGHTATHHASAAPARPQ 1058