Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1042 a.a., ribonuclease, Rne/Rng family from Enterobacter asburiae PDN3
Score = 981 bits (2535), Expect = 0.0
Identities = 587/1097 (53%), Positives = 727/1097 (66%), Gaps = 103/1097 (9%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHE KKANIYKG+ITRIEPSLEAAFVDY
Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEIAREYFP Y+ GRPNIKDVL EGQEVIVQI+KEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL+SLELP GMGLIVRTAGVGKSAE L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL 180
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDL+ LKHW AI++A++S PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A
Sbjct: 181 QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240
Query: 241 LEHI-RLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
+HI L RPDF +++K Y GE+PLFSH+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300
Query: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE
Sbjct: 301 AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360
Query: 360 NRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLA 419
NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRC GTG +RDNESL+
Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420
Query: 420 LSVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQ-QVRITIVPNSDME 478
LS+LRLIEEEALK+NT +V A+VPV +ASYLLNEKR +++ IE Q VR IVPN M+
Sbjct: 421 LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ 480
Query: 479 TPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRI-EEPVLKGF---- 533
TPH+ V+RVR+GEE LSYL+PK + E E D E +++ E+P L F
Sbjct: 481 TPHYHVLRVRKGEETTTLSYLLPK----LHEEEMALPSDEEPAERKLPEQPALATFIMPE 536
Query: 534 AAPAEAVPAPTPKPKAE-PQPVAEVQQPAQPGFFSRVFKAIASLFS----------ATPE 582
A P A+ P KP+A+ P+ A QPAQPG SR F A+ +F+ P+
Sbjct: 537 APPEAALEKPAAKPEAQKPEAAAAKAQPAQPGLLSRFFGALKKMFAEEEVQPEQPKEEPK 596
Query: 583 AAKVEAPVTQNSEQDKPRRERNDRNNDRRRNPRDKNR--RRGNEENNE-RNDKETSNSNR 639
AAK E + Q+ RR+RNDR++ RN R + R R EN E R +E + NR
Sbjct: 597 AAKPERQQDRRKRQNN-RRDRNDRSDRNDRNDRSERRDNRDNRSENGEGREQREDNRRNR 655
Query: 640 KPQERKPKQERGERNERNDRNERP---ETERPERQDRRNKRDESKTAKLLEQGRQLAAEA 696
+ +++ ++R R + D +E+ + ++P R+ R + DE + A+ ++ + L E
Sbjct: 656 REKQQPNVEDREIRQQAGDESEKSKQRDDQQPRRERSRRRNDEKRQAQ--QEVKNLNRE- 712
Query: 697 QQEVKAVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAE------ELDNLSTAPVDNAFD 750
+ V+ + ++E+ V RR++R+LS+++R + E E ++T D
Sbjct: 713 -EPVEQQDGEQEERTQVMPRRKQRQLSQKVRFASEATEESGAIAVETSEIATGTQLAKVD 771
Query: 751 APAPVNLPVTDDFADSAQEDNEQDDQKQRRNRRSPRHLRASGQRRRRGRDRR-----PNP 805
PA V V D +N + RR+RRSPRHLR SGQRRRR RD R P P
Sbjct: 772 LPAVVESNVEQD----DNGENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 827
Query: 806 FRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVVESEKVAA 865
+ ASPEMA GKV RY +A RP+ E + V + P AA V +E
Sbjct: 828 LTI---ACASPEMASGKVWIRYPVA-RPEQVVEEQPVTEEV--IAPAAAVEAVATE---- 877
Query: 866 PRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVITDVIAETLIAPVEPVVVEATVIE 925
AA EP V E + + P V+ A V
Sbjct: 878 -----------------------AATVVEPQVVEAEAPHAVE---VETTHPEVIAAPVDA 911
Query: 926 AP--VIEESATETAALETVVAKVAEVEEPATISDEVVAQTTVEVIADKMAEPIKV-VKPV 982
AP + EE A V +VAE EP ++ A+T VE A+++ + +++ V+PV
Sbjct: 912 APQLIAEEDA-------VVAEEVAEEAEPVAAVED-TAETLVETTAEEVVQDVEIQVEPV 963
Query: 983 T--VSATSLTAKAVIQQP----YASSPMTKAPGSDDIREVQVNAAPLR-AERYQARG-AG 1034
A + + V+ P A++PMT+AP D + E ++ +R A + +G AG
Sbjct: 964 VEEAKAPEVKPEPVVSAPAAAHVATAPMTRAPAPDYVPEAPRHSDWVRPAFNFDGKGAAG 1023
Query: 1035 SQVARNQASAGMSKPQS 1051
A +QA+A ++PQS
Sbjct: 1024 GHSATHQATAPATRPQS 1040