Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1051 a.a., ribonuclease E from Dickeya dianthicola ME23
Score = 974 bits (2519), Expect = 0.0
Identities = 574/1083 (53%), Positives = 712/1083 (65%), Gaps = 68/1083 (6%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ+EELRVALVDGQ+L+DLDIESPGHE KKANIYKG+ITRIEPSLEAAFVDY
Sbjct: 1 MKRMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEIAREYFP Y+ GRPNIKDVL EGQEVIVQ++KEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPSSYNAHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL SLELP GMGLIVRTAGVGKSA+ L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL 180
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDL LKHW AIK+A++ APFLIHQESNVIVRA RDYLR DIGEILID+ I E A
Sbjct: 181 QWDLAFRLKHWEAIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA 240
Query: 241 LEHI-RLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
EHI L RPDF +++K Y GE+PLFSH+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 KEHIAALGRPDFGSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300
Query: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQREVE
Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 360
Query: 360 NRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLA 419
NRLR+AVR DRAR+QIGRISRFGLLEMSRQRLSPSL E+SHH+CPRC GTG IRDNESL+
Sbjct: 361 NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS 420
Query: 420 LSVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQ-QVRITIVPNSDME 478
LS+LRLIEEEALK+NT +V A+VPV IASYLLNEKR ++N IEK Q VR IVP+ ME
Sbjct: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGDVRAIIVPHDGME 480
Query: 479 TPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRI-EEPVLKGFA--- 534
TPH+ V+RVR+GEE+ LSY++P+ L + E + ++ + +R+ E+P L F
Sbjct: 481 TPHYSVLRVRKGEEKQTLSYMLPQLL----DVESQPSLEEQAPERRVPEQPALASFTMSD 536
Query: 535 -APAEAVPAP-TPKPKAEPQPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEA---P 589
PAE PA PKAE QP ++ G F R A+ +F+A + + A
Sbjct: 537 IPPAETKPASVVAAPKAEKQP-----SSSERGLFGRFVGALKGIFAAPADVKEKPAETVE 591
Query: 590 VTQNSEQDKPRRERNDRNNDRRRNPRDKNRRRGNEENNERNDKETSNSNRKPQERKPKQE 649
T + ++ K R N R + RR PR+ R R + N+R + ++ P P Q+
Sbjct: 592 ATSDEQEQKQERRNNRRQSGRRERPREP-RERDEQRRNKRTQPQNADVETAPVAEAPAQD 650
Query: 650 RGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVKAVEPKEEK 709
+ R+E+ R +R E +R ++++R +D+ K + + AA+ + V + EK
Sbjct: 651 KAVRDEQR-REQRAERQRRRQEEKRQAQDDVKELNAVTE----AADTEDAVAEL----EK 701
Query: 710 AAVVKERRQRRKLSKQIRVKDQLAAEELD--NLSTAPV--DNAFDAPAPVNLPVTDDFAD 765
A V +RRQRR+L++++RV+D A E L AP + + P P +
Sbjct: 702 PAQVMQRRQRRQLTQKVRVQDSDATGENTEAQLPAAPYVQQSVVEVPEPTASAAEGTNTE 761
Query: 766 SAQEDNEQDDQKQRRNRRSPRHLRASGQRRRRGRDRR---PNPFRLRKGGVASPEMAMGK 822
+ ++ +++ RR+RRSPRHLR SGQRRRR RD R +P + + ASPEMA GK
Sbjct: 762 NDAVESNRENGLPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPMTQAS-ASPEMASGK 820
Query: 823 VMPRYDLAPRPQSRHETAEGAQH--------------VTHVTPTAATAVVESEKVAAPRV 868
V RY +A +PQ E A V T A V+++ +V+AP
Sbjct: 821 VWIRYPVA-QPQQPERAEEPASEFIDAPLSAAPELAAVAVATLPEAVDVLDTAQVSAPAT 879
Query: 869 LGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVITDVIAETLIAPVEPVVVEATVIEAPV 928
+ + + + A VQ E V +E I +AP + A V EAP
Sbjct: 880 PLSTPTQQETVPTEVPQHLDANVQEEDVQEE--IAQPQETQQLAP-QFAETAALVEEAPA 936
Query: 929 IEESATETAALETVVAKVAEVEEPATISDEVVAQTTVEVIADKMAEPIKVVKPVTVSATS 988
A A + A+ E+P + + V+ + T P VSA +
Sbjct: 937 AVVIADSDATTRSEPAETQPTEQPQVVHESVLVENT----------PATQKPVAAVSAPA 986
Query: 989 LTAKAVIQQPYASSPMTKAPGSDDIREV-QVNAAPLRAERYQARG-AGSQVARNQASAGM 1046
+ V Q YA++PMT+AP + + +V+ A + +G AG A NQASA
Sbjct: 987 EISAVVPSQHYAAAPMTRAPAPAYVPDAPRVSDWQRPAFAFSGKGSAGGHAAENQASAPA 1046
Query: 1047 SKP 1049
++P
Sbjct: 1047 TRP 1049