Pairwise Alignments
Query, 1052 a.a., ribonuclease E from Vibrio cholerae E7946 ATCC 55056
Subject, 1061 a.a., endoribonuclease; RNA-binding protein from Escherichia coli BL21
Score = 1009 bits (2608), Expect = 0.0
Identities = 595/1095 (54%), Positives = 722/1095 (65%), Gaps = 82/1095 (7%)
Query: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY 60
MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHE KKANIYKG+ITRIEPSLEAAFVDY
Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60
Query: 61 GAERHGFLPLKEIAREYFPDGYSYQGRPNIKDVLNEGQEVIVQIEKEERGSKGAALTTFI 120
GAERHGFLPLKEIAREYFP YS GRPNIKDVL EGQEVIVQI+KEERG+KGAALTTFI
Sbjct: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120
Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLELPQGMGLIVRTAGVGKSAEEL 180
SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL+SLELP+GMGLIVRTAGVGKSAE L
Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180
Query: 181 EWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNSIYERA 240
+WDL+ LKHW AIK+A++S PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A
Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240
Query: 241 LEHI-RLVRPDFVNRVKKYEGEVPLFSHFQIESQIESAFQREVRLPSGGSIVIDPTEALT 299
+HI L RPDF +++K Y GE+PLFSH+QIESQIESAFQREVRLPSGGSIVID TEALT
Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300
Query: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359
+IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE
Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360
Query: 360 NRLREAVRVDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLA 419
NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRC GTG +RDNESL+
Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420
Query: 420 LSVLRLIEEEALKDNTSQVLAVVPVSIASYLLNEKRRSINHIEKAQQ-VRITIVPNSDME 478
LS+LRLIEEEALK+NT +V A+VPV IASYLLNEKR ++N IE Q VR IVPN ME
Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480
Query: 479 TPHFEVIRVREGEEQDVLSYLIPKKLEAMKEAEGKEVVDVELKPKRIEEPVLKGFAAPAE 538
TPH+ V+RVR+GEE LSY++PK E EA + + KR E+P L FA P +
Sbjct: 481 TPHYHVLRVRKGEETPTLSYMLPKLHE---EAMALPSEEEFAERKRPEQPALATFAMP-D 536
Query: 539 AVPAPTPKPKAEP-------QPVAEVQQPAQPGFFSRVFKAIASLFSATPEAAKVEAPVT 591
PAPTP A P A PAQPG SR F A+ +LFS E E P
Sbjct: 537 VPPAPTPAEPAAPVVAPAPKSAPATPAAPAQPGLLSRFFGALKALFSGGEETKPSEQPTP 596
Query: 592 QNSEQDKPRRERNDRNNDRRRNPRDKNRRR----------GNEENNERNDKETSNSNRKP 641
+ + KP R++ DR R+ N RD+N RR N E N RN ++ +
Sbjct: 597 K--AEAKPERQQ-DRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653
Query: 642 QERKPKQERGERNERNDRNERPETERPERQDRRNKRDESKTAKLLEQGRQLAAEAQQEVK 701
+E + + E E+ D + P ER R++ +KR + AK L Q E +Q
Sbjct: 654 RESRQQVEVTEKARTTDEQQAPRRERSRRRN-DDKRQAQQEAKALNVEEQSVQETEQ--- 709
Query: 702 AVEPKEEKAAVVKERRQRRKLSKQIRVKDQLAAEEL------DNLSTAPVDNAFDAPAP- 754
EE+ V+ RR++R+L++++R + +A E + + ++ P+ +APAP
Sbjct: 710 -----EERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPI--VQEAPAPR 762
Query: 755 -----VNLPVTDDFADSAQEDNEQDDQKQ----RRNRRSPRHLRASGQRRRRGRDRR--- 802
V LPV A QE+N D++ RR+RRSPRHLR SGQRRRR RD R
Sbjct: 763 TELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPT 822
Query: 803 --PNPFRLRKGGVASPEMAMGKVMPRYDLAPRPQSRHETAEGAQHVTHVTPTAATAVVES 860
P P + ASPE+A GKV RY + RPQ + Q HV P + +
Sbjct: 823 QSPMPLTV---ACASPELASGKVWIRYPIV-RPQDVQVEEQREQEEVHVQP------MVT 872
Query: 861 EKVAAPRVLGGVAFPEMAMGKVIVRRETAAVQPEPVVQEPVITDVIAETLIAPVEPVVVE 920
E A + V+ P + +V +P+P V E +VIA + V+ E
Sbjct: 873 EVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIA-AAVTEQPQVITE 931
Query: 921 ATVIEAPVIEESATETAALETVVAKVAEVEEPATI---SDEVVAQTTVEVIADKMAEPIK 977
+ V A + E A + A + EV E A + EVVAQ V+A+ AE ++
Sbjct: 932 SDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAE-VE 990
Query: 978 VVKPVTVSATSLTAKAVIQQPYASSPMTKAPGSDDIREVQVNAAPLRAE-RYQARG-AGS 1035
V V T ++ +A++PMT+AP + + E ++ R ++ +G AG
Sbjct: 991 TVAAVEPEVT-------VEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGG 1043
Query: 1036 QVARNQASAGMSKPQ 1050
A + ASA ++PQ
Sbjct: 1044 HTATHHASAAPARPQ 1058