Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Rhodanobacter sp000427505 FW510-R12

 Score =  129 bits (324), Expect = 9e-35
 Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 29/312 (9%)

Query: 18  AGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVEVKE 77
           AG+R D  L     +  +S +   ++ G V ++         L  G+ V++    VE+ E
Sbjct: 15  AGRRFDQALAEMFPDYSRSRLSGWIKSGAVTLDGAPAPPRQLLRGGERVQL---RVEL-E 70

Query: 78  NEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRAL-RPQA 136
           NE A      S   ++   IV+ED+HLL+L+KP+G  VH G+G   G +  L AL     
Sbjct: 71  NEVA------SAAEDIALAIVHEDEHLLVLDKPAGLVVHPGAGNPAGTL--LNALLHHDP 122

Query: 137 RFLEL-----VHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECK 191
           R  EL     VHR+D+DTSG+++VA+       L        V++ Y A+V+G   A   
Sbjct: 123 RLAELPRAGIVHRLDKDTSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTLVAG-G 181

Query: 192 VVNAPL---LKNEVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQ 248
            V+AP+   L + +   VR   +GK + T +R+ E+F   +L+Q    TGRTHQIRVH  
Sbjct: 182 TVDAPIGRSLGDRLRQAVRDEEDGKRAVTHYRVRERFRAHSLLQCRLETGRTHQIRVHLA 241

Query: 249 YMGHPIAWDDRYG-------DRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPL 301
           ++ HP+  D  YG           +   A  G  R  LHA  + F+HPA+ + +   A  
Sbjct: 242 HISHPLVGDPLYGGGLKLPKGASAELAAALRGFRRQALHAEQLAFIHPATGEAMSFGAER 301

Query: 302 EAHLEQALTKMR 313
            A  ++ +  +R
Sbjct: 302 PADQQRLIETLR 313