Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Ribosomal large subunit pseudouridine synthase C from Xanthobacter sp. DMC5

 Score =  145 bits (366), Expect = 1e-39
 Identities = 105/338 (31%), Positives = 168/338 (49%), Gaps = 45/338 (13%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVT 72
           + ED AG R+D + +    ++    + +++R G+VRV+  RVK   ++E G  VR+PP+ 
Sbjct: 8   VAEDEAGMRLDRWFKVHYPDLSFGHLQKLVRTGQVRVDGGRVKTSSRVEPGQSVRIPPLG 67

Query: 73  VEVKE----------------------------NEPAPP-STKLSKVAELEH-------C 96
           +E  E                            N PA P ++K   V +LE         
Sbjct: 68  LEEPEAAAAPAKGARSGEAGKDGARGASTEPGANPPAKPRASKDPAVRKLEEDRAFIKSI 127

Query: 97  IVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQ-ARFLELVHRIDRDTSGILLV 155
            ++ED  +++LNKP G AV GGSG +      L AL+ +  +   LVHRID+DTSG LL+
Sbjct: 128 TLFEDKDVMVLNKPFGLAVQGGSGTYRHVDGLLEALKDRDGQKPRLVHRIDKDTSGCLLI 187

Query: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVRVNPNGKPS 215
           AK R A   L   FR +  +K Y+A+V G        ++  L ++E    +RV  +G+  
Sbjct: 188 AKSRLAASVLAKSFRSREARKVYWAVVPGVPKPRQGRISTYLARDEDEEKMRVARHGEDE 247

Query: 216 E----TRFRILEKFAE-ATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTA 270
                T + ++++ A+  + +   PVTGRTHQ+R H  ++ HPI  D +Y D   + +  
Sbjct: 248 ASHAITYYAVVDQAAQKMSWLSLKPVTGRTHQLRAHLAHIHHPILGDPKYFD--IENWEL 305

Query: 271 QFGIE-RLFLHAANIQFVHPASEKKLEIHAPLEAHLEQ 307
             G++ RL L A  +   HP     +++ APL  H+ Q
Sbjct: 306 PGGLQNRLHLLARRLVIPHPRGNGVIDVSAPLPQHMAQ 343