Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

 Score =  298 bits (762), Expect = 2e-85
 Identities = 159/299 (53%), Positives = 209/299 (69%), Gaps = 8/299 (2%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ +++  + AGQRIDNFL  +LK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR
Sbjct: 11  VQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 70

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           VPPV V  ++ EP P +  L  +  LE  I++ED+ L+++NKP G AVHGGSGL+FG IE
Sbjct: 71  VPPVRVPERD-EPVPLAQGL--LQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFGVIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           A R LRP A+ LELVHR+DRDTSG+L++AKKRS LRHL    R   V K Y ALV G+W 
Sbjct: 128 AFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWA 187

Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243
           +  K V APL K+ + S   +V V+  GK + T F++L +F + AT+V+A PVTGRTHQI
Sbjct: 188 SSIKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQI 247

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           RVHT + GH IA D +YGD  F       G +RLFLHA  +    P    +L++ AP++
Sbjct: 248 RVHTLHAGHCIAGDTKYGDEDFSKEIRDLGGKRLFLHAYMLTVPLP-DGGELKLQAPVD 305