Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score =  140 bits (352), Expect = 5e-38
 Identities = 99/308 (32%), Positives = 157/308 (50%), Gaps = 26/308 (8%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71
           ID    GQR+D  L   +    +S + +++  G V +  + V K    ++AG   R+   
Sbjct: 30  IDSAQHGQRLDRALAALVPEFSRSYLQQLIEAGAVELQGRTVTKVSAGVKAGQAGRI--- 86

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALR 130
                E  P P S    +   ++   VYED+HL I++KP+G  VH   G   G +   L 
Sbjct: 87  -----ELRPTPQSQAF-RPETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGLL 140

Query: 131 ALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW- 186
           AL P+A  L    +VHR+DRDTSG+++VA+ R+ +  + A    + V++ Y A+    W 
Sbjct: 141 ALDPKAALLPRAGIVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAIGHKPWV 200

Query: 187 DAECKVVNAPLLKNEVN----SIVRVNPN-GKPSETRFRILEKFAEATLVQASPVTGRTH 241
            A  + V+AP+ ++  N    ++V +  + GK + T    L+  +E  +V+ +  TGRTH
Sbjct: 201 GAAARQVDAPIGRDPRNRLRMAVVDLERHAGKTARTLIERLDSHSEGCVVRCTLETGRTH 260

Query: 242 QIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPL 301
           QIRVH   +GHP+  D  YG           G+ R  LHA  + FVHP +++ +E  +P 
Sbjct: 261 QIRVHMASIGHPLVGDALYGG------APAVGLSRQALHAFRLAFVHPVTQEPMEFRSPP 314

Query: 302 EAHLEQAL 309
              L QAL
Sbjct: 315 PPDLIQAL 322