Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) from Variovorax sp. SCN45

 Score =  270 bits (689), Expect = 5e-77
 Identities = 148/317 (46%), Positives = 201/317 (63%), Gaps = 24/317 (7%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           ++F+ +D + AGQR+DNFL   LK +PK+ VYRI+R GEVR+NK RV+AE ++EAGDV+R
Sbjct: 37  IKFLTVDAESAGQRLDNFLFRHLKGVPKTHVYRIIRSGEVRINKGRVQAETRIEAGDVLR 96

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           +PP+ +  +  + A P          E  ++ EDD +L ++KP+G AVHGGSG+ FG IE
Sbjct: 97  LPPIRISARAEDGATPPAPAR-----EFPVLLEDDAVLAIDKPAGVAVHGGSGVSFGVIE 151

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
            LR  RP A+FLELVHR+DR+TSGILLVAKKRSAL  LQ QFRE+   K Y ALV G W 
Sbjct: 152 QLRTARPGAKFLELVHRLDRETSGILLVAKKRSALVALQDQFRERETGKTYLALVEGAWP 211

Query: 188 AECKVVNAPLLK-------------NEVNSIVRVNPNGKPSETRFRILEKF---AEAT-- 229
           A  KV++APL K               V  + + +P+   + T  R+L +     +AT  
Sbjct: 212 ANKKVLDAPLAKYLLPDGSGAGAGERRVRVVAKDHPDAMRAVTLVRVLARLTLPGDATPM 271

Query: 230 -LVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVH 288
            L+  +  TGRTHQIRVH    GHPIA DD+YG+        + G++R+FLHA  +QF H
Sbjct: 272 SLLAVTIKTGRTHQIRVHLASAGHPIAGDDKYGESDRQRALQKIGLKRMFLHAWRLQFNH 331

Query: 289 PASEKKLEIHAPLEAHL 305
           PAS +++ + A L   L
Sbjct: 332 PASGERVALQAGLPPEL 348