Pairwise Alignments
Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056
Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas syringae pv. syringae B728a ΔmexB
Score = 306 bits (785), Expect = 3e-88 Identities = 163/299 (54%), Positives = 207/299 (69%), Gaps = 8/299 (2%) Query: 8 VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67 VQ +++ ++AGQRIDNFL LK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR Sbjct: 11 VQLVEVAPELAGQRIDNFLITYLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 70 Query: 68 VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127 +PPV V ++ EP P + L + LE IVYED L++LNKP+G AVHGGSGL FG IE Sbjct: 71 IPPVRVPERD-EPVPVAQAL--LQRLEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE 127 Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187 A R LRP A+ LELVHR+DRDTSG+L++AKKRS LRHL R V K Y ALV G+W Sbjct: 128 AFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGNWA 187 Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243 K V APL+K+ + S +V VN GK + T F++L +F + AT+V+A PVTGRTHQI Sbjct: 188 TALKQVRAPLMKSNLRSGERMVEVNEEGKEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247 Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302 RVHT + GH IA D +YGD F G +RLFLHA + P KL + AP++ Sbjct: 248 RVHTLHAGHAIAGDTKYGDENFSREIRDLGGKRLFLHAYMLTVPMP-DGSKLNVQAPVD 305