Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  306 bits (785), Expect = 3e-88
 Identities = 163/299 (54%), Positives = 207/299 (69%), Gaps = 8/299 (2%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ +++  ++AGQRIDNFL   LK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR
Sbjct: 11  VQLVEVAPELAGQRIDNFLITYLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 70

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           +PPV V  ++ EP P +  L  +  LE  IVYED  L++LNKP+G AVHGGSGL FG IE
Sbjct: 71  IPPVRVPERD-EPVPVAQAL--LQRLEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           A R LRP A+ LELVHR+DRDTSG+L++AKKRS LRHL    R   V K Y ALV G+W 
Sbjct: 128 AFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEALRGDGVDKRYMALVRGNWA 187

Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243
              K V APL+K+ + S   +V VN  GK + T F++L +F + AT+V+A PVTGRTHQI
Sbjct: 188 TALKQVRAPLMKSNLRSGERMVEVNEEGKEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           RVHT + GH IA D +YGD  F       G +RLFLHA  +    P    KL + AP++
Sbjct: 248 RVHTLHAGHAIAGDTKYGDENFSREIRDLGGKRLFLHAYMLTVPMP-DGSKLNVQAPVD 305