Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., ribosomal large subunit pseudouridine synthase C from Pseudomonas putida KT2440

 Score =  314 bits (804), Expect = 2e-90
 Identities = 169/299 (56%), Positives = 213/299 (71%), Gaps = 8/299 (2%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ I++  ++AGQRIDNFL   LK +PK++VYRILRKGEVRVNK RVK EYK++AGD+VR
Sbjct: 11  VQLIEVAPELAGQRIDNFLITALKGVPKTLVYRILRKGEVRVNKGRVKPEYKIQAGDIVR 70

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           VPPV +  ++ EPAP +  L  +  LE  IVYED  L+++NKP+G AVHGGSGL FG IE
Sbjct: 71  VPPVRLPERD-EPAPVAQGL--LQRLEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           ALR LRP A+ LELVHR+DRDTSG+L++AKKRS LRHL A  R   V K Y ALV GHW 
Sbjct: 128 ALRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWP 187

Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243
              K VNAPLLK+ + S   +V VN  GK + T FR+L +F + AT+V+A P+TGRTHQI
Sbjct: 188 TSKKQVNAPLLKSNLRSGERMVEVNEEGKEALTLFRVLRRFGDFATIVEARPITGRTHQI 247

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           RVHT + GH IA D +YGD  F     + G +RLFLHA  +    P    +L++ AP++
Sbjct: 248 RVHTLHAGHMIAGDSKYGDEDFSREIRELGGKRLFLHAYALTVPLP-DGGELKLEAPVD 305