Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Ribosomal large subunit pseudouridine synthase C from Pseudomonas sp. DMC3

 Score =  305 bits (780), Expect = 1e-87
 Identities = 164/299 (54%), Positives = 209/299 (69%), Gaps = 8/299 (2%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ +++  + AGQRIDNFL  +LK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR
Sbjct: 26  VQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 85

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           VPPV V  ++ EP P +  L  +  LE  IV+ED  L+++NKP+G AVHGGSGL+FG IE
Sbjct: 86  VPPVRVPERD-EPVPLAQGL--LQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVIE 142

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           A R LRP A+ LELVHR+DRDTSG+L++AKKRS LRHL  Q R   V K Y ALV G+W 
Sbjct: 143 AFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEQLRGDGVDKRYMALVRGNWA 202

Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243
              K V APLLK+ + S   +V VN  GK + T F++L +F + AT+V+A PVTGRTHQI
Sbjct: 203 TSIKQVRAPLLKSNLRSGERMVEVNDEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQI 262

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           RVHT + GH IA D +YGD  F       G +RLFLHA  +    P    KL + AP++
Sbjct: 263 RVHTLHAGHCIAGDSKYGDEDFTKEIRDLGGKRLFLHAYMLTVPLP-DGGKLNLQAPVD 320