Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., RNA pseudouridine synthase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  141 bits (355), Expect = 3e-38
 Identities = 98/325 (30%), Positives = 166/325 (51%), Gaps = 34/325 (10%)

Query: 11  IDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPP 70
           I +D+  A  R+D FL ++L N+ ++ +   +R   V+VN+K VK  YK++  DV+ V  
Sbjct: 22  IVVDKGQALLRLDKFLMDRLPNVTRNKLQGAIRSEAVQVNQKPVKVSYKVKPLDVITVT- 80

Query: 71  VTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGG----SGLHFGAI 126
           +    ++ +  P +  L         I+YEDD LL++NK +G  VH      +G    A+
Sbjct: 81  LAEAPRDTDIVPENIPLD--------IIYEDDELLLVNKAAGMVVHPAYNNWNGTLVNAL 132

Query: 127 EALRALRPQARFLE----LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
                  P  R  E    LVHRID+DTSG+L++AK   ++ +L  QF + ++++ YYALV
Sbjct: 133 TYHLQNLPTHRNGEGRPGLVHRIDKDTSGLLVIAKTDYSMAYLAKQFFDHSIERTYYALV 192

Query: 183 MGHWDAECKVVNAPLLKN----EVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTG 238
            G    +   +   + ++    +V ++      GK + T +++L  F   +LVQ +  TG
Sbjct: 193 WGVPKEQKGTITGHVGRSAKDRKVMAVYPAGDYGKHAVTHYKVLRSFRYVSLVQCNLETG 252

Query: 239 RTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLF------------LHAANIQF 286
           RTHQIR H +++GHP+  D  YG  +   Y    G  + F            LHA ++ F
Sbjct: 253 RTHQIRAHMKHIGHPLFSDATYGGDKI-LYGMPNGTYKSFVENAFKLMPRQALHAKSLGF 311

Query: 287 VHPASEKKLEIHAPLEAHLEQALTK 311
           +HP +++ ++ ++ L       L K
Sbjct: 312 LHPDTKEFMQFNSDLPEDFRAVLEK 336