Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  138 bits (347), Expect = 2e-37
 Identities = 100/309 (32%), Positives = 155/309 (50%), Gaps = 28/309 (9%)

Query: 3   EIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLE 61
           E+ T+V   ++  DM G RID  L   +    +S + +++  G V +    + K   ++ 
Sbjct: 18  EVETRV--CEVPADMHGWRIDRALAQLIPEFSRSYLQQLMVDGAVEMRGTALRKPSARIA 75

Query: 62  AGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGL 121
           AGD      + VE++  + A      +   +    +VYED  LL++ KP+G  VH  +G 
Sbjct: 76  AGD-----RLAVELRPTQQAQAFVPQAMALD----VVYEDADLLVIQKPAGLVVHPAAGH 126

Query: 122 HFGAI-EALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKY 177
             G +   L A    A  L    +VHR+D+DTSG++LV K R A+  L      + V + 
Sbjct: 127 WTGTLLNGLLAHHAGAASLPRAGIVHRLDKDTSGLMLVGKSRQAVEALVRAIAAREVNRQ 186

Query: 178 YYALVMGHWDAEC-KVVNAPLLKNEVN----SIVRVNPN-GKPSETRFRILEKFAEATLV 231
           Y AL  G W     K V+ P+ ++  N    ++VR +   GK ++T  R+L+   +A LV
Sbjct: 187 YLALAHGRWQGAAEKGVDQPIGRDVHNRLRMAVVRPDTGIGKAAQTTIRLLDTSDQACLV 246

Query: 232 QASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPAS 291
                TGRTHQIRVH  ++GHP+  D  YG R      A +GI+R  LHAA +   HP +
Sbjct: 247 ACKLHTGRTHQIRVHMAWLGHPLVADTLYGGR------ALWGIDRQALHAARLSLRHPIT 300

Query: 292 EKKLEIHAP 300
            + L   +P
Sbjct: 301 GEPLAFRSP 309