Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  261 bits (667), Expect = 2e-74
 Identities = 143/321 (44%), Positives = 197/321 (61%), Gaps = 31/321 (9%)

Query: 7   QVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVV 66
           +++ I +DE+ AGQR+DNFL   LK +PKS +YRI+R GEVR NK RV A+ ++  GDV+
Sbjct: 9   EIRHITVDEESAGQRLDNFLIRILKGVPKSHIYRIIRSGEVRRNKGRVSADDRVAVGDVL 68

Query: 67  RVPPVTV----EVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLH 122
           R+PP+ +    E K   PAP           E  +V+ED+  L ++KP+G AVHGGSG+ 
Sbjct: 69  RIPPIRLSERAEEKAAHPAPAR---------EFPVVFEDEAFLAIDKPAGVAVHGGSGVS 119

Query: 123 FGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
           FG IE +R  RPQAR LELVHR+DR+TSG+LL+AKK+SAL+ LQ QFRE+   K Y ALV
Sbjct: 120 FGVIEQMRQARPQARLLELVHRLDRETSGLLLIAKKKSALKALQDQFRERETGKTYLALV 179

Query: 183 MGHWDAECKVVNAPLLK-------NEVNSIVRVNPNGKPSETRFRILEKFAEA------- 228
            G W A  KV++ PL K         V      +P+G  S T  ++ ++           
Sbjct: 180 KGVWPARLKVLDQPLHKYLLPDGERRVRVTTPDDPDGMCSVTLVKVAQRVPAPPGLEAGA 239

Query: 229 ----TLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANI 284
               +L++ +  TGRTHQIRVH    GHPIA DD+YGD   +   A+ G++R+FLHA  +
Sbjct: 240 PEGFSLLEVTIKTGRTHQIRVHLSSAGHPIAGDDKYGDFELNRQLARIGLKRMFLHAWRL 299

Query: 285 QFVHPASEKKLEIHAPLEAHL 305
           +  HP ++  LE+ A L   L
Sbjct: 300 RLTHPVTKSPLELQAELPPEL 320