Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  129 bits (324), Expect = 9e-35
 Identities = 96/316 (30%), Positives = 152/316 (48%), Gaps = 28/316 (8%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71
           + E+  GQR+D  L     +  +S +   +    V VN +   K + K+  G+ V +   
Sbjct: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDAE 70

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALR 130
             E    E            ++   IVYEDD +L++NKP    VH G+G   G +  AL 
Sbjct: 71  IDEEIRFE----------AQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL 120

Query: 131 ALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
              P    +    +VHR+D+DT+G+++VAK   A   L    + + + + Y A+ +GH  
Sbjct: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT 180

Query: 188 AECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVH 246
           A    VN P+ ++      + V+P GKP+ T +RI+E F   T ++    TGRTHQIRVH
Sbjct: 181 AG-GTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVH 239

Query: 247 TQYMGHPIAWDDRYGDR---------RFDAYTAQFGIERLFLHAANIQFVHPASEKKLEI 297
             ++ HP+  D  YG R          F +   +F  +R  LHA  ++  HP S  ++E 
Sbjct: 240 MAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKF--DRQALHATMLRLYHPVSGIEMEW 297

Query: 298 HAPLEAHLEQALTKMR 313
           HAP+   +   +  MR
Sbjct: 298 HAPIPQDMVDLIDAMR 313