Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., Pseudouridylate synthases, 23S RNA-specific from Kangiella aquimarina DSM 16071

 Score =  125 bits (315), Expect = 1e-33
 Identities = 96/314 (30%), Positives = 161/314 (51%), Gaps = 24/314 (7%)

Query: 14  DEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKA-EYKLEAGDVVRVPPVT 72
           DE + G+R+D  L  Q  +  +S +   ++ G V+VN + + + +YK+   + + +    
Sbjct: 13  DEKVYGKRLDAALSQQFSDYSRSRIQEWIQNGFVKVNGEVITSNKYKMAGFEDIEIN-AE 71

Query: 73  VEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA-IEALRA 131
           +EV   E  P +  L         IVYEDD LL++NKP+G  VH G+G   G  + AL  
Sbjct: 72  IEVA-GEWKPEAIDLD--------IVYEDDALLVINKPAGLVVHPGAGNQDGTMVNALLH 122

Query: 132 LRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDA 188
             P+   L    ++HRID++T+G+L+VAK  +A  +L  Q + +   + Y A+V      
Sbjct: 123 HCPELANLPRAGIIHRIDKETTGLLVVAKTIAAHTNLVEQLQNRAFTREYDAVV-NRVMV 181

Query: 189 ECKVVNAPLLKNEVN-SIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVHT 247
               ++ P+ ++    + + V P+GK + T +R++EKF + T ++    TGRTHQIRVH 
Sbjct: 182 SGGTIDKPIGRHPTKRTSMAVVPDGKRAITHYRVVEKFLDHTHLKLRLETGRTHQIRVHM 241

Query: 248 QYMGHPIAWDDRYGDR-----RFDAYTAQF--GIERLFLHAANIQFVHPASEKKLEIHAP 300
            Y+  P+  D  Y  R     R      +     +R  LHA+ +   HP S + +E  AP
Sbjct: 242 AYLKFPLVGDPLYSGRYRVPTRITPILRETLDSFKRQALHASLLGLNHPESGEYIEWRAP 301

Query: 301 LEAHLEQALTKMRQ 314
           L   +   L ++R+
Sbjct: 302 LPQDMSSLLEQLRE 315